Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_G17
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 148 8e-37
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 145 7e-36
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 37 0.003
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 26 5.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.4
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 5.4
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 26 5.4
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.1
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 9.4
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 148 bits (359), Expect = 8e-37
Identities = 77/146 (52%), Positives = 91/146 (62%)
Frame = -1
Query: 765 PXXVFVILSRPFGQRXXXXFXAHTGVRLLRXVSHQVLLLTRSKXHSRELRXLIVLDPAQD 586
P V VI SRP+G R F AHTG + RE R +IV DP D
Sbjct: 74 PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRAD 133
Query: 585 HQPITEASYVNIPVIALCNTDPPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 406
Q I EAS+VNIPVIALC+TD L VD+AIP N K SIGL W+LLAREVLRLRG +
Sbjct: 134 AQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNIS 193
Query: 405 RDQRWDVVVDLFFYRDPEESEKDEQQ 328
R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 194 RTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 145 bits (351), Expect = 7e-36
Identities = 74/145 (51%), Positives = 90/145 (62%)
Frame = -1
Query: 765 PXXVFVILSRPFGQRXXXXFXAHTGVRLLRXVSHQVLLLTRSKXHSRELRXLIVLDPAQD 586
P V V+ +R +G R F AHTG + RE R ++V DP D
Sbjct: 73 PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRAD 132
Query: 585 HQPITEASYVNIPVIALCNTDPPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLP 406
Q I EAS+VNIPVIALC+TD L VDIAIP N K SIGL+W+LLAREVLR+RG L
Sbjct: 133 AQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLS 192
Query: 405 RDQRWDVVVDLFFYRDPEESEKDEQ 331
R WDV+ DL+FYRDPEE E++E+
Sbjct: 193 RSAPWDVMPDLYFYRDPEEVEREEE 217
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -1
Query: 612 LIVLDPAQDHQPITEASYVNIPVIALCNTDPPLRFVDIAIPCNTKSSHSIGLMWWLLAR 436
+++L+P ++ EA ++P I + +TD R V IP N S L+ LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 480 WCCMG*QCPQILVGG 524
WCC G C ++L GG
Sbjct: 55 WCCNGKGCKKVLAGG 69
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = -1
Query: 606 VLDPAQDHQPITEASYVNIPVIALCNTDPPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 427
VL+P P+T + ++ C P LR D+ ++S H L+ +L
Sbjct: 9 VLEPVNFVGPVTSLALIHNDKFLCCAQGPCLRIYDV-----SESRHESDLIKSILLPFHN 63
Query: 426 RLRGVLPRDQ 397
R+ G+LP Q
Sbjct: 64 RIHGMLPCKQ 73
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 573 TEASYVNIPVIALCNTDPPLRFVDIAIPCNTKSSHSI 463
T A + + LC+ + RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 327 LVVHPFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTS 458
LV+ PF G+R N+ Q +AG+ +++ +L+ T +S
Sbjct: 667 LVLKPFPLKPQDGQRVNKQQSVNAGNVRTNNKHGSLNNNTAPSS 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,798
Number of Sequences: 5004
Number of extensions: 57044
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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