Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_G14
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 751 VPPXXXPPKNPPKXXXPXXEXIXPPXPPP 837
           +PP   PP  PP    P  +   PP PPP
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQ--PPPPPPP 30


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
 Frame = +1

Query: 571 PQXXXLLPXXAXPXXXXXXPXXQXXXPXP---PQXXXXTPVPLQ-AXPXGXXPXXPXXVX 738
           PQ     P  A P      P      P P   P      P P Q A P    P  P    
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPS 192

Query: 739 HXPXVPPXXXPP 774
             P +PP   PP
Sbjct: 193 AVPPMPPKVPPP 204


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 34/161 (21%), Positives = 41/161 (25%), Gaps = 3/161 (1%)
 Frame = +1

Query: 364  PXPSGXKXXLPGKTGAXXPRXPPXXISXXPSX*XSRXGSASXSXXXXSXXLPLXXXKXX- 540
            P PS     +P  +GA  P   P  I   P    +       S        P        
Sbjct: 1067 PAPSSEIPSIPAPSGAP-PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPK 1125

Query: 541  PXGSSXPSXXPQXXXLLPXXAXPXXXXXXPXXQXXXPXPPQXXXXTPVPLQAXPXGXXPX 720
            P  ++ P   P     +P  +        P      P P       P P    P    P 
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP----PV 1181

Query: 721  XPXXVXHXPXVPPXXXPPKNPPKXXXP--XXEXIXPPXPPP 837
                    P  PP   PP   P    P        PP P P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 21/99 (21%), Positives = 25/99 (25%)
 Frame = +1

Query: 541 PXGSSXPSXXPQXXXLLPXXAXPXXXXXXPXXQXXXPXPPQXXXXTPVPLQAXPXGXXPX 720
           P  +S P   P      P    P      P      P PP        P  + P    P 
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPP-----PIPPPSNGTVSSPPNSPPRPIAPV 278

Query: 721 XPXXVXHXPXVPPXXXPPKNPPKXXXPXXEXIXPPXPPP 837
                 +    PP   P            +   PP PPP
Sbjct: 279 SMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPP 317


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
 Frame = +2

Query: 656 PXXPPXKRQXRSRPXPXXPPPXXXRXXPIXQXFHPXXXPQK------TXXNXXPPXXRXS 817
           P  PP     ++ P P  PPP      P          P +      +  N  PP    S
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPS 280

Query: 818 XPPXRP 835
            PP  P
Sbjct: 281 QPPRPP 286


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +1

Query: 724 PXXVXHXPXVPPXXXPPKNPPKXXXPXXEXIXPPXPPP 837
           P  +   P  P    PP  PP           PP PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,481
Number of Sequences: 5004
Number of extensions: 23392
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)