Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_G12
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.020
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.11 
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    29   1.0  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    29   1.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   1.3  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   2.3  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    27   3.1  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    26   5.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.3 bits (75), Expect = 0.020
 Identities = 27/84 (32%), Positives = 34/84 (40%)
 Frame = -3

Query: 578 PSPSSQGPEAGIHPPVRPSSCR*RHPPVKVKG*PEGVXPRGALPWSK*SDRSTAHRVPTR 399
           P P    P  G  PP   SS    +PP      P    P  ALP    + R++   VPT 
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP--ALPPLGNASRTSTPPVPTP 420

Query: 398 QAGCGPAGYSGTPAAPSGRPVGLP 327
            +    A  S  P+AP   P+G P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAP 444


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 25/84 (29%), Positives = 35/84 (41%)
 Frame = +3

Query: 168 TRRPIPSEVRTRMR*GGYHG*HYNQTARLTPRYAQPTEPSRRIEGSETSAASVRQPDGPP 347
           T+ P P +  +++R GG        +   TPR A P   ++       S  S  QP  PP
Sbjct: 57  TKLPPPPKHASQLRAGG-------SSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPSQPP 109

Query: 348 RRCRWCPGIPRWTTTSLPGRDAMR 419
           +     P +P   T SLP R   R
Sbjct: 110 KE----PALPSRGTPSLPSRPGSR 129


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 22/77 (28%), Positives = 28/77 (36%)
 Frame = +1

Query: 238 TRRRGSPQGTPSRRSLRGESKALKRRPPRYGSPTGRPDGAAGVPEYPAGPQPACRVGTRC 417
           T R G    + SR SL  + K    +P R   PT       G P  P GP P    G   
Sbjct: 88  TVRLGRSTSSRSRNSLNLDMKDPSEKPRR-SLPTAAGQNNIGSPPTPPGPFPG---GLST 143

Query: 418 AVDRSLYLLHGSAPRGL 468
            +   L   H S  + +
Sbjct: 144 DIQEKLKAFHASRSKSM 160


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 244 RRGSPQGTPSRRSLRGESKALKRRPPRYGSPTGRPDGAAGVPEY 375
           R  SP    SR     E    +   PRY S +  PDG +  P+Y
Sbjct: 116 RSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDY 159


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 238  TRRRGSPQGTPSRRSLRGESKALKRRPPRYGSPTGRPDGAAGVPEYPAGPQPACR 402
            TR   S +  P + + R  SK L+      GSP+      A     P  P+PA +
Sbjct: 864  TRTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPALK 918


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 376 PAGPQPACRVGTRCAVDRSLYLLHGSAPRGLTPSGHPLTFTGGCR 510
           P GP    ++ +   V+ S  L+  ++P GL P+G P  F G  R
Sbjct: 399 PKGPNSIYKIPSASMVNLSSPLV--TSPSGLNPTGRPSRFGGRVR 441


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = -3

Query: 479 PEGVXPRGALPWSK*SDRSTAHRVPTRQAGCGPAGYSGTPAAPSGRPVGLPYRGGRRFRA 300
           P+ V P G   W +   +  A+  P++       G   +P+ PSG       RGG   R 
Sbjct: 389 PQPVMPAGMADWQQQQQQGAAYFDPSKMNQGTGDGVPFSPSMPSGSS-----RGGYHGRN 443

Query: 299 FDSPRRLRRLG 267
              P R R  G
Sbjct: 444 PGGPNRQRYRG 454


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 172 DVRSPPRSEPG*GRGATTVNTTTRRRGSPQGTPSRRSLR 288
           +++ PP    G GRGAT   TT    G  Q  PS+ S++
Sbjct: 10  NMQPPPNYVAGLGRGATGF-TTRSDLGPAQELPSQESIK 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,220
Number of Sequences: 5004
Number of extensions: 62677
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)