Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_G10
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    29   4.9  
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    29   4.9  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    29   4.9  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    29   4.9  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    29   4.9  

>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 39  GGXXG*AXWGXPXERGNXS*KXGPGNPG 122
           GG  G   WG P +RG      GPG  G
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGG 248


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 39  GGXXG*AXWGXPXERGNXS*KXGPGNPG 122
           GG  G   WG P +RG      GPG  G
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGGPGGGG 210


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 39  GGXXG*AXWGXPXERGNXS*KXGPGNPG 122
           GG  G   WG P +RG      GPG  G
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGGPGGGG 210


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 39  GGXXG*AXWGXPXERGNXS*KXGPGNPG 122
           GG  G   WG P +RG      GPG  G
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGG 248


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 39  GGXXG*AXWGXPXERGNXS*KXGPGNPG 122
           GG  G   WG P +RG      GPG  G
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGG 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,782,256
Number of Sequences: 27780
Number of extensions: 128593
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)