Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_G09
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   182   4e-47
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   182   4e-47
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    28   1.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   3.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.9  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  182 bits (444), Expect = 4e-47
 Identities = 95/176 (53%), Positives = 117/176 (66%)
 Frame = -1

Query: 640 GVPQGPREPKGSFFCGXTKXLPP*XXKGF*ENSXHGXWHPFRVSFTVARAGQKGYHXRTE 461
           GV +G +  +G+     TK LP    +G  + +  G WHP  V +TVARAG  GY  RT+
Sbjct: 219 GVTRG-KGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQ 277

Query: 460 MNKKXYXIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 281
           +N K Y IG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   G
Sbjct: 278 LNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330

Query: 280 PKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 113
           P KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 331 PVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  182 bits (444), Expect = 4e-47
 Identities = 95/176 (53%), Positives = 117/176 (66%)
 Frame = -1

Query: 640 GVPQGPREPKGSFFCGXTKXLPP*XXKGF*ENSXHGXWHPFRVSFTVARAGQKGYHXRTE 461
           GV +G +  +G+     TK LP    +G  + +  G WHP  V +TVARAG  GY  RT+
Sbjct: 219 GVTRG-KGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQ 277

Query: 460 MNKKXYXIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 281
           +N K Y IG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   G
Sbjct: 278 LNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330

Query: 280 PKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 113
           P KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 331 PVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 404 NFAILFVDSLSNTIXFLVHFSTXMITFLTSTSY 502
           NFA+L+  SL ++  F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 201 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 88
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 134 HGYTQEGSYSRRSCGYHNPS 75
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 558 PFXFYGGNXFVXPQKNEPFG 617
           PF F G +  + P ++EPFG
Sbjct: 620 PFIFEGADFALIPSRDEPFG 639


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 371 QIILSRCIVFNNFAILFVDSLSNTIXFLVHFSTXMITFLTS 493
           ++ L RC++   F +LF  S S +  FL   S   I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,513
Number of Sequences: 5004
Number of extensions: 56854
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)