Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_G07
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.76 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 39  SLNRSQHDAALPSTTPRQERKSST 110
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 417 TKCPKLRFLSY*XVLLSQATS 479
           TKCP   + SY  VL   ATS
Sbjct: 633 TKCPYPSYYSYIGVLTLVATS 653


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 244 SKRE-TRRRSPFGSRRSMLSXFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGR 68
           ++RE  R  +PF +  +  S   L RA    RSG  SV+   +E     F    G + GR
Sbjct: 502 ARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTE-----FGIPTGTLYGR 556

Query: 67  A-ASCCDLLRLSPAP 26
                 +L R +P P
Sbjct: 557 CKREGIELSRSNPTP 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,647
Number of Sequences: 438
Number of extensions: 3025
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)