Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_G06
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      29   0.58 
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    29   1.0  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    27   3.1  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   5.4  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = -3

Query: 475 WNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRC 296
           W++  +  A  NC    A NRVG +E  +                F+G S   GP G   
Sbjct: 184 WDLVTKARAFENCIPLVAANRVGTDEKLS----------------FFGHSKIIGPTGKVI 227

Query: 295 PGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRL-XMYVNSLS 167
             L   ++G++   VDL+  + +R     +   R+  +Y   LS
Sbjct: 228 KALDEEKEGVISYTVDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 441 FVIAAFLASTFHMYSLPPSPAIVAD--GLKTISAPFCPNIIQFKTWCRPETDVHRDLAV 611
           F+ AA  + + H+ S+PPSP +++D      I      +  QF+    P  DV   LA+
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSDLVNQSPIGQGVVASQNQFEYGVDPNLDVELALAL 214


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 592 TSVSGRHHVLNWMMFGQNGAEIVFNPSATIA 500
           T +SG  H++   +FG +G+E+ F    T A
Sbjct: 75  TVISGASHLVGTRVFGTSGSELSFTKDGTHA 105


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +3

Query: 390 FGNSSXPTRLMAAVK*QFVIAAFLASTFHMYSLPPSP---AIVADGLKTISAPFC 545
           F N S  + L++  + +++ + F ++   ++++P  P   A++A GL ++  P C
Sbjct: 243 FTNGSPYSLLLSDDRWEYLASLFTSNFTAVHNIPSVPLLHALLAAGLSSLKTPLC 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,808
Number of Sequences: 5004
Number of extensions: 56621
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)