Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_G04
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.22 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
 Frame = +3

Query: 225 PXXPPPPXHXPPXPXHPPXXPPPXXPPP--PPXXPP 326
           P   P P   P  P       P   PPP  PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.8 bits (54), Expect = 0.50
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 234 PPPPXHXPPXPXHPPXXPPPXXP 302
           PP P   PP P  PP  PP   P
Sbjct: 39  PPNPSQGPP-PGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 236 PPPPPXPAXPXPPXXXPPPPXXPXXPXPXPXPPP 337
           P P P  +   P    PP P     P   P  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +2

Query: 239 PPPPXPAXPXPPXXXPPPPXXPXXPXPXPXPPPRXP 346
           P    P     P   P  P     P P   PPP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 224 PXXPPPPPPXPAXPXP 271
           P  P PPPP P+   P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 285 PPPXXPPPPP 314
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 285 PPPXXPPPPP 314
           P P  PPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 245 PPXPAXPXPPXXXPPP 292
           PP PA P PP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 233 PPPPPPXPAXPXPPXXXPPPPXXPXXPXPXPXPPPR 340
           P P PP P     P   P        P P P P PR
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRP-PHPR 141



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 233 PPPPPPXPAXPXPPXXXPPPPXXPXXPXPXPXPPPR 340
           P P PP P     P   P        P P P P PR
Sbjct: 133 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRP-PHPR 167


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 233  PPPPPPXPA 259
            PPPPPP P+
Sbjct: 1355 PPPPPPPPS 1363


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 294  GGGGXXXGGXGXAGXGG 244
            GGGG   G  G  G GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 294  GGGGXXXGGXGXAGXGG 244
            GGGG   G  G  G GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,203
Number of Sequences: 438
Number of extensions: 5977
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)