Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_G03
         (999 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 16/55 (29%), Positives = 17/55 (30%)
 Frame = +2

Query: 626  PXXRXQXXXPPPQXXXRXPTXQGPXGXTPPQXRTPPXXTQNQDXPXPXQPPXTXP 790
            P  R Q   PP       PT   P    PP    PP        P P  P  + P
Sbjct: 1690 PPVRPQSAAPPQMSA---PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 26/110 (23%), Positives = 34/110 (30%)
 Frame = +2

Query: 653 PPPQXXXRXPTXQGPXGXTPPQXRTPPXXTQNQDXPXPXQPPXTXPXPXTXXXKPTRXXX 832
           P PQ   R PT        PP+   PP    +   P P + P   P P +    P +   
Sbjct: 131 PTPQSELRPPT------SAPPRPSIPPPSPASA-PPIPSKAP---PIP-SSLPPPAQPAA 179

Query: 833 XRGXAATXPGXTXAXXAXPPAXRXSPXXPXPKXXRXXQPXNXXPPXXKPP 982
                 + P    A    PP     P    P      +P +  PP    P
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAP 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.127    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,882
Number of Sequences: 5004
Number of extensions: 14755
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)