Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_G02
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.13
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.30
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.6
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 26 8.7
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +3
Query: 810 PXXXPPPXXXXPRPPPPNXXXXPXPXXXP-XXXPPXXPXP 926
P PP P PPPP P P P PP P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = +3
Query: 753 PXYLPXAXXXXPAXXRVQXPXXXPPPXXXXPRPPPPNXXXXPXPXXXPXXXPPXXP 920
P P A ++ P PPP PPPP+ P P P PP P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSV---PPPPSAP--PMPAGPPSAPPPPLP 1736
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.30
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = +1
Query: 688 GATXTXXPXGXXPPPAPXXXPXXXTSRXXXXXPRRXPAYXPXXXXPXPXXXXPDPPPPTX 867
GA P G P P P P P+ P P P PP P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP----PVPKPSVAAPPVPVP 1136
Query: 868 XGXPXHXXPPXXXPPXP 918
G P P PP P
Sbjct: 1137 SGAPPVPKPSVAAPPVP 1153
Score = 28.3 bits (60), Expect = 1.6
Identities = 28/118 (23%), Positives = 31/118 (26%), Gaps = 1/118 (0%)
Frame = +1
Query: 568 PXSPPAXPHXTXGAPPXXXXXXXGGAHXXPXXXXXXXXXXGATXTXXPXGXXPP-PAPXX 744
P P P + APP GA P PP PAP
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 745 XPXXXTSRXXXXXPRRXPAYXPXXXXPXPXXXXPDPPPPTXXGXPXHXXPPXXXPPXP 918
P P+ P P P P PPP+ P P PP P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPV--PKPSVGVPPVPPPSTA--PPVPTPSAGLPPVP 1230
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/64 (26%), Positives = 18/64 (28%)
Frame = +1
Query: 727 PPAPXXXPXXXTSRXXXXXPRRXPAYXPXXXXPXPXXXXPDPPPPTXXGXPXHXXPPXXX 906
PP P + P P P P P PP P G P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAP---PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAA 1168
Query: 907 PPXP 918
PP P
Sbjct: 1169 PPVP 1172
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Frame = +1
Query: 709 PXGXXPPPA------PXXXPXXXTSRXXXXXPRRXPAYXPXXXXPXPXXXXPDPPPPT 864
P PPPA P S P P Y P P P P PPPPT
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAP--PPPPPPT 245
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/71 (25%), Positives = 21/71 (29%)
Frame = +1
Query: 709 PXGXXPPPAPXXXPXXXTSRXXXXXPRRXPAYXPXXXXPXPXXXXPDPPPPTXXGXPXHX 888
P P PAP P + P P P P P PPP G +
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPPAVSAGGSRYY 793
Query: 889 XPPXXXPPXPQ 921
P P P+
Sbjct: 794 APAPQAEPEPK 804
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 849 PPPPNXXXXPXPXXXPXXXPPXXP 920
PPPP P P P PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAP 756
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = +1
Query: 724 PPPAPXXXPXXXTSRXXXXXPRRXPAYXPXXXXPXPXXXXPDPPPPTXXGXPXHXXPPXX 903
PP AP R P R P+ P P PP P+ P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPR-PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 904 XPP 912
PP
Sbjct: 183 SPP 185
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 243 PHARLVSSKAXDXDSSHPGLPKGEPXF-APYNYP 145
PH R S + D DSSH LP P P+++P
Sbjct: 59 PHGRYTWSTSPDTDSSH--LPSTPPTVDIPFHHP 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,756
Number of Sequences: 5004
Number of extensions: 30630
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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