Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_G01
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.75 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   7.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
 Frame = +3

Query: 543 PPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXG--XGPPGXPP 716
           PP +   V   PN PP P A           S    PPP++             PP  PP
Sbjct: 257 PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316

Query: 717 P 719
           P
Sbjct: 317 P 317


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +3

Query: 651 PPPATWXGCXQXXGXGPPGXPPPXGXXSXXXXPPXXXP 764
           PPPA   G       GPP  PPP G       PP   P
Sbjct: 752 PPPAPIMG-------GPPPPPPPPGVAGAGPPPPPPPP 782


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -2

Query: 266 DFTSR-----VSHSKRETRRRSPFGSRRSMLKIFFLTRASRLRRSG 144
           DF+SR         + + RRR P  SRR + +     RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,460
Number of Sequences: 5004
Number of extensions: 37261
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)