Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_G01
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 34 0.13
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.30
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.30
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.30
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 32 0.40
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 32 0.53
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.2
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 31 1.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.2
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 2.8
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.7
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 4.9
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 6.5
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 6.5
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 6.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 6.5
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 6.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.6
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 8.6
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 28 8.6
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 28 8.6
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 8.6
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 8.6
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 28 8.6
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 28 8.6
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/74 (29%), Positives = 23/74 (31%)
Frame = +3
Query: 543 PPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXPPPX 722
PP P G PN PP P S PPP G P PPP
Sbjct: 490 PPPMPSINGHAPNPPPPPPLLGIAPM-----STNAPPPPPMPGMAPLSTGAPTPPPPPPV 544
Query: 723 GXXSXXXXPPXXXP 764
G + PP P
Sbjct: 545 GMANGGPPPPPPLP 558
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/75 (30%), Positives = 23/75 (30%)
Frame = +3
Query: 528 GXRAXPPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPG 707
G PP P G P PP T G PPP G G PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPIT------GGPPPPPPPG---GLPPISGGPPPP 761
Query: 708 XPPPXGXXSXXXXPP 752
PPP G PP
Sbjct: 762 PPPPGGCPPPPPPPP 776
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +3
Query: 651 PPPATWXGCXQXXGXGPPGXPPPXGXXSXXXXPPXXXP 764
PPP G G GPP PPP G PP P
Sbjct: 727 PPPPPPGGLPPITG-GPPPPPPPGGLPPISGGPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/75 (30%), Positives = 23/75 (30%)
Frame = +3
Query: 528 GXRAXPPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPG 707
G PP P G P PP T G PPP G G PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPIT------GGPPPPPPPG---GLPPISGGPPPP 761
Query: 708 XPPPXGXXSXXXXPP 752
PPP G PP
Sbjct: 762 PPPPGGCPPPPPPPP 776
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +3
Query: 651 PPPATWXGCXQXXGXGPPGXPPPXGXXSXXXXPPXXXP 764
PPP G G GPP PPP G PP P
Sbjct: 727 PPPPPPGGLPPITG-GPPPPPPPGGLPPISGGPPPPPP 763
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/75 (30%), Positives = 23/75 (30%)
Frame = +3
Query: 528 GXRAXPPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPG 707
G PP P G P PP T G PPP G G PP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPIT------GGPPPPPPPG---GLPPISGGPPPP 344
Query: 708 XPPPXGXXSXXXXPP 752
PPP G PP
Sbjct: 345 PPPPGGCPPPPPPPP 359
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +3
Query: 651 PPPATWXGCXQXXGXGPPGXPPPXGXXSXXXXPPXXXP 764
PPP G G GPP PPP G PP P
Sbjct: 310 PPPPPPGGLPPITG-GPPPPPPPGGLPPISGGPPPPPP 346
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 32.3 bits (70), Expect = 0.40
Identities = 25/91 (27%), Positives = 27/91 (29%), Gaps = 1/91 (1%)
Frame = +3
Query: 480 GRXQGXGXKKNPGXXXGXRAXPPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXP-P 656
G G G + G G P G P P P G G P
Sbjct: 96 GGGGGGGGGEAAGGGGGCTGCCNPGPPGPGGRPGKPGTPGKPGAPGNPGASGKGAAAPCE 155
Query: 657 PATWXGCXQXXGXGPPGXPPPXGXXSXXXXP 749
P+T C Q GPPG P P G P
Sbjct: 156 PSTPPPC-QPCPAGPPGPPGPDGTPGEPGGP 185
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/105 (25%), Positives = 29/105 (27%), Gaps = 10/105 (9%)
Frame = +3
Query: 480 GRXQGXGXKKNPGXXXGXRAXPPXAPXXVGXN---PNXPPDPXAXXXTXXRGEXGSXXXX 650
G G G +P G P P N P P P + GE G
Sbjct: 180 GEPGGPGPAGSPAGPSGPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGPAG 239
Query: 651 PP-------PATWXGCXQXXGXGPPGXPPPXGXXSXXXXPPXXXP 764
PP P G G GP G P P G P P
Sbjct: 240 PPGPAGPAGPDGQSGSGSAGGPGPKGPPGPAGQPGSDGNPGTAGP 284
Score = 28.7 bits (61), Expect = 4.9
Identities = 26/86 (30%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Frame = +3
Query: 498 GXKKNPGXXXGXRAXP--PXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWX 671
G NPG A P P P P PP P T GE G PA
Sbjct: 138 GAPGNPGASGKGAAAPCEPSTPPPCQPCPAGPPGPPGPDGTP--GEPGGPGPAGSPAG-- 193
Query: 672 GCXQXXGXGPPGXPPPXGXXSXXXXP 749
G GP G P P G P
Sbjct: 194 ----PSGPGPAGPPGPAGPPGNDGQP 215
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 31.9 bits (69), Expect = 0.53
Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Frame = +3
Query: 546 PXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXP-PPATWXGCXQXXGXGPPGXPPPX 722
P P P P P A G P P W C Q GPPG P P
Sbjct: 104 PPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGP-PGPPGPPGPP 162
Query: 723 GXXSXXXXP 749
G P
Sbjct: 163 GDSGEPGSP 171
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +3
Query: 543 PPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXPPP 719
PP P P PP P T S PPP G PG PPP
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/74 (27%), Positives = 21/74 (28%)
Frame = +3
Query: 543 PPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXPPPX 722
PP P G P PP P + PPP G G PP P
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPP--------PPPPPGRTPGPPGMPGMPPPPPPSRF 325
Query: 723 GXXSXXXXPPXXXP 764
G PP P
Sbjct: 326 GPPGMGGMPPPPPP 339
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/84 (28%), Positives = 26/84 (30%)
Frame = +3
Query: 474 PXGRXQGXGXKKNPGXXXGXRAXPPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXP 653
P G G PG R P AP NP P +P A G G+
Sbjct: 184 PPGTAGNDGTPGQPGAPGQVRTVP--APPG---NPGQPGEPGAQGPPGEDGRPGNSGPQG 238
Query: 654 PPATWXGCXQXXGXGPPGXPPPXG 725
PP Q G PG P G
Sbjct: 239 PPGPQGEPGQDGAPGNPGAPGEAG 262
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +3
Query: 543 PPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXPPP 719
PP P P PP P T S PPP G PG PPP
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/74 (27%), Positives = 21/74 (28%)
Frame = +3
Query: 543 PPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXPPPX 722
PP P G P PP P + PPP G G PP P
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPP--------PPPPPGRTPGPPGMPGMPPPPPPSRF 335
Query: 723 GXXSXXXXPPXXXP 764
G PP P
Sbjct: 336 GPPGMGGMPPPPPP 349
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.5 bits (63), Expect = 2.8
Identities = 27/103 (26%), Positives = 30/103 (29%), Gaps = 11/103 (10%)
Frame = +3
Query: 474 PXGRXQGXGXKKNPGXXX-GXRAXPPXAPXXVGX--NPNXPPDPXAXXXTXXRGEXGSXX 644
P G+ G PG G P AP G +P P P + GS
Sbjct: 195 PAGQAGRPGNDGQPGAPSFGGGVGAPGAPGPAGDAGSPGQPGAPGQPGRPGKNAQGGSSR 254
Query: 645 XXPP--------PATWXGCXQXXGXGPPGXPPPXGXXSXXXXP 749
PP P G GPPG P P G P
Sbjct: 255 PGPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQP 297
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 29.1 bits (62), Expect = 3.7
Identities = 26/96 (27%), Positives = 26/96 (27%), Gaps = 4/96 (4%)
Frame = +3
Query: 474 PXGRXQGXGXKKNPGXXX-GXRAXPPXAPXXVGX-NPNXPPDPXAXXXTXXRGEXGSXXX 647
P G G PG A PP G PN P T G G
Sbjct: 131 PSGAPGADGDAAGPGEAGPAGPAGPPGPDGQPGAPGPNGQPGAAGTTSTNEPGSPGPAGP 190
Query: 648 XPP--PATWXGCXQXXGXGPPGXPPPXGXXSXXXXP 749
P PA GPPG P P G P
Sbjct: 191 PGPAGPAGEDAAAPESPPGPPGPPGPPGKDGEAGAP 226
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +3
Query: 555 PXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXPPPXG 725
P V NP P P G G P A + GPPG P P G
Sbjct: 110 PPGVAGNPGKPGKPGKPGAPGNPGAPGKGAAVPCEAKTPPPCKPCPAGPPGPPGPDG 166
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Frame = +3
Query: 498 GXKKNPGXXXGXRAXPPXAPXXVGXNPNXPPDPXAXXXTXXR--GEXGSXXXXPPPATWX 671
G ++ P PP + + + PP P A R PPP
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 286
Query: 672 GCXQXXGXG-PPGXPPPXGXXSXXXXPP 752
G G PP PPP G PP
Sbjct: 287 GSPPPPRAGSPPPPPPPRGSPPTGSLPP 314
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Frame = +3
Query: 498 GXKKNPGXXXGXRAXPPXAPXXVGXNPNXPPDPXAXXXTXXR--GEXGSXXXXPPPATWX 671
G ++ P PP + + + PP P A R PPP
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 307
Query: 672 GCXQXXGXG-PPGXPPPXGXXSXXXXPP 752
G G PP PPP G PP
Sbjct: 308 GSPPPPRAGSPPPPPPPRGSPPTGSLPP 335
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Frame = +3
Query: 498 GXKKNPGXXXGXRAXPPXAPXXVGXNPNXPPDPXAXXXTXXR--GEXGSXXXXPPPATWX 671
G ++ P PP + + + PP P A R PPP
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 292
Query: 672 GCXQXXGXG-PPGXPPPXGXXSXXXXPP 752
G G PP PPP G PP
Sbjct: 293 GSPPPPRAGSPPPPPPPRGSPPTGSLPP 320
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +3
Query: 555 PXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXPPPXG 725
P G +P P P G G P A Q GPPG P P G
Sbjct: 111 PPGPGGSPGKPGKPGKPGAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPGPPGPDG 167
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/69 (27%), Positives = 19/69 (27%)
Frame = +3
Query: 546 PXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXPPPXG 725
P P P P P A T G G PP Q G G PG P
Sbjct: 173 PAGPAGNAGPPGAPGGPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQPGGPGNPGAPGAVT 232
Query: 726 XXSXXXXPP 752
PP
Sbjct: 233 EVPGQQGPP 241
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Frame = +3
Query: 474 PXGRXQGXGXKKNPGXXXGXRAXPPXAPXXVGXN--PNXPPDPXAXXXTXXRGEXGSXXX 647
P G G PG P AP G + P P P A G G
Sbjct: 188 PAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGA 247
Query: 648 XPPPATWXGCXQXXGXGPPGXPPPXG 725
P Q GPPG P P G
Sbjct: 248 PGPDGPPGADGQS---GPPGPPGPAG 270
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Frame = +3
Query: 474 PXGRXQGXGXKKNPGXXXGXRAXPPXAPXXVGXN--PNXPPDPXAXXXTXXRGEXGSXXX 647
P G G PG P AP G + P P P A G G
Sbjct: 188 PAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGA 247
Query: 648 XPPPATWXGCXQXXGXGPPGXPPPXG 725
P Q GPPG P P G
Sbjct: 248 PGPDGPPGADGQS---GPPGPPGPAG 270
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/90 (24%), Positives = 24/90 (26%)
Frame = +3
Query: 480 GRXQGXGXKKNPGXXXGXRAXPPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPP 659
G+ G NPG P P P PP P G G PP
Sbjct: 110 GKPGAPGLNGNPGRPP-KEPCEPLTPPPCKPCPEGPPGPAGPPGPD--GNKGPLGPPGPP 166
Query: 660 ATWXGCXQXXGXGPPGXPPPXGXXSXXXXP 749
+ GP G P P G P
Sbjct: 167 GPEGPNGEPGNKGPAGPPGPGGKPGPAGPP 196
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 633 GSXXXXPPPATWXGCXQXXGXGPPGXPPPXG 725
GS PPP G G PPG PPP G
Sbjct: 1579 GSHCQGPPPLM-GGPPPRLGMPPPGPPPPNG 1608
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/82 (25%), Positives = 24/82 (29%)
Frame = +3
Query: 480 GRXQGXGXKKNPGXXXGXRAXPPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPP 659
G+ G PG P P G P PP P + + G PP
Sbjct: 226 GQPGAPGQDGQPGAPGTNTVNSPGGPGPAG--PPGPPGPPGQDGSGGAAQPGPPGPPGPP 283
Query: 660 ATWXGCXQXXGXGPPGXPPPXG 725
Q G G PG P G
Sbjct: 284 GN---DGQPGGPGQPGGPGQDG 302
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +3
Query: 555 PXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXP-PPATWXGCXQXXGXGPPGXPPPXG 725
P G +P P P G G P P T C G GPPG P G
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPG-GPPGPAGPAG 162
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +3
Query: 555 PXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXP-PPATWXGCXQXXGXGPPGXPPPXG 725
P G +P P P G G P P T C G GPPG P G
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPG-GPPGPAGPAG 162
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Frame = +3
Query: 543 PPXAPXXVGXNPNXP-PD--PXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXP 713
P AP G P P PD P A G+ G PP Q GPPG P
Sbjct: 201 PCEAPPGDGGPPGQPGPDGPPGAPGNAGEDGKPGDQGPRGPPGIPGAPGQPGRPGPPGEP 260
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Frame = +3
Query: 543 PPXAPXXVGXNPNXP-PD--PXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXP 713
P AP G P P PD P A G+ G PP Q GPPG P
Sbjct: 182 PCEAPPGDGGPPGQPGPDGPPGAPGNAGEDGKPGDQGPRGPPGIPGAPGQPGRPGPPGEP 241
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +3
Query: 555 PXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXP-PPATWXGCXQXXGXGPPGXPPPXG 725
P G +P P P G G P P T C G GPPG P G
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPG-GPPGPAGPAG 162
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +3
Query: 555 PXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXP-PPATWXGCXQXXGXGPPGXPPPXG 725
P G +P P P G G P P T C G GPPG P G
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPG-GPPGPAGPAG 162
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 651 PPPATWXGCXQXXGXGPPGXPPPXGXXSXXXXPP 752
PPPA C G GPP PPP G PP
Sbjct: 35 PPPACGNPC--GGGFGPP--PPPFGPVGYALPPP 64
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/70 (27%), Positives = 20/70 (28%)
Frame = +3
Query: 543 PPXAPXXVGXNPNXPPDPXAXXXTXXRGEXGSXXXXPPPATWXGCXQXXGXGPPGXPPPX 722
PP P G PP P GE + PPP G G P
Sbjct: 127 PPPPPKGTGS----PPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTE 182
Query: 723 GXXSXXXXPP 752
G S PP
Sbjct: 183 GNASRRPPPP 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.136 0.436
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,802,274
Number of Sequences: 27780
Number of extensions: 277032
Number of successful extensions: 1111
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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