Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_F23
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.070
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.1
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 6.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 22 9.1
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.070
Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Frame = +1
Query: 346 PKTXPPAXTXXXXPPXXPXXPXXPXXXPPXXXXXXXPRXXXRXXAXXPXGVXXP-APXXX 522
P P P P P P PP P A P P AP
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Query: 523 PXXXTXPPPPPXXPXPXP 576
PP PP P P P
Sbjct: 461 AGMPAAPPLPPAAPAPPP 478
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/58 (29%), Positives = 17/58 (29%)
Frame = +3
Query: 297 KSPPHXXGXGPPXXXXXXNPXPGPXXXPAPXXXXTXXPXPXXXPXXPXXXXPPXXXXP 470
KSPP PP P P P P P P P P PP P
Sbjct: 730 KSPPP-----PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/56 (25%), Positives = 15/56 (26%)
Frame = +1
Query: 487 PXGVXXPAPXXXPXXXTXPPPPPXXPXPXPPLXXXGPXXXXXXXXXXXXPLPXXXP 654
P + P P PPPPP PP P P P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +1
Query: 487 PXGVXXPAPXXXPXXXTXPPPPPXXPXPXPP 579
P V P P P P P P P PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/107 (21%), Positives = 25/107 (23%), Gaps = 4/107 (3%)
Frame = +1
Query: 346 PKTXPPAXTXXXXPPXXPXXPXXPXXXP----PXXXXXXXPRXXXRXXAXXPXGVXXPAP 513
P T PP PP P P P P P G+ P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI---PP 1093
Query: 514 XXXPXXXTXPPPPPXXPXPXPPLXXXGPXXXXXXXXXXXXPLPXXXP 654
P P P P P P P P+P P
Sbjct: 1094 VPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/73 (21%), Positives = 17/73 (23%)
Frame = +1
Query: 358 PPAXTXXXXPPXXPXXPXXPXXXPPXXXXXXXPRXXXRXXAXXPXGVXXPAPXXXPXXXT 537
PP PP P P P+ P P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 538 XPPPPPXXPXPXP 576
PPP P P P
Sbjct: 1210 VPPPSTAPPVPTP 1222
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/49 (28%), Positives = 15/49 (30%)
Frame = +1
Query: 550 PPXXPXPXPPLXXXGPXXXXXXXXXXXXPLPXXXPXLXSGXXPXPXSXP 696
PP P P P P P P P + S P P S P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 508 APXXXPXXXTXPPPPPXXPXPXPP 579
AP P + PPPP P P P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGP 1727
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 155 VLDQVXXILLQFKGSILQPRPXDGSAVLLG 66
VLD+ IL+ F S +PRP D + + G
Sbjct: 324 VLDKASDILIPFPSSKNRPRPGDWNCPMCG 353
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 21.8 bits (44), Expect(2) = 9.1
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +1
Query: 487 PXGVXXPAPXXXPXXXTXPPPPPXXP 564
P PA P PPPPP P
Sbjct: 173 PPSAAAPATSL-PSDYNPPPPPPPPP 197
Score = 21.4 bits (43), Expect(2) = 9.1
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 541 PPPPPXXPXPXPP 579
P PPP P PP
Sbjct: 236 PAPPPPPPPTLPP 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.146 0.501
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,231
Number of Sequences: 5004
Number of extensions: 15845
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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