Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F21
         (1139 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.30 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   0.36 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.69 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   6.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 424 PPPPPPPXXXXKKKPPPXXXGG 359
           PPPPPPP      +PPP    G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 424 PPPPPPPXXXXKKK 383
           PPPPPPP    K+K
Sbjct: 24  PPPPPPPGYVKKRK 37



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 424 PPPPPPPXXXXKKKPPP 374
           PPPPPPP        PP
Sbjct: 9   PPPPPPPPGFEPPSQPP 25


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect(2) = 0.36
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 424 PPPPPPPXXXXKKKPPPXXXG 362
           PPPPPPP       P     G
Sbjct: 370 PPPPPPPPELLNHSPKSRPLG 390



 Score = 24.2 bits (50), Expect(2) = 0.36
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 433 FXXPPPPPPP 404
           +  PPPPPPP
Sbjct: 368 YSPPPPPPPP 377


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 424 PPPPPPPXXXXKKKPP 377
           PPPPPPP    + KPP
Sbjct: 311 PPPPPPPSRRNRGKPP 326



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/42 (28%), Positives = 13/42 (30%)
 Frame = +2

Query: 533 PPPXXXXXXAXXPPXXXXXXXXGGGXXXXXPXXXXPPPPPPP 658
           PP       +  PP          G     P     PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 424 PPPPPPPXXXXKKKPPP 374
           PPPPPPP       PPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 424 PPPPPPPXXXXKKKPPP 374
           PPPPPPP       PPP
Sbjct: 761 PPPPPPPPGVAGAGPPP 777



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
 Frame = +2

Query: 506 KKXXXKKKPPPPXXXXXXAXXP---PXXXXXXXXGGGXXXXXPXXXX---PPPPPPP 658
           +K   K  PPPP         P   P        GG      P       PPPPPPP
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/58 (27%), Positives = 17/58 (29%)
 Frame = +3

Query: 525 KNPPXPXXXXXXPXPXPXXXXXXXXGGAXXXXXPXXXXPPPXPPPXXFXSCXPXXTXP 698
           K+PP P      P P P                P    PPP PPP       P    P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPA-------PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 356 PPPXXXGGGFFFXPXXGGGGGGGXXKXPPPP 448
           PPP    GG    P   G  G G    PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -3

Query: 654 GGGGGGXXXXGXXXXXPPPXXXXXXXXGGXXAXXXXXXGGGGF 526
           G  GGG    G     PPP        GG         G GGF
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGF 226


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 424  PPPPPPPXXXXKKK 383
            PPPPPPP    +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.148    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,315
Number of Sequences: 5004
Number of extensions: 31598
Number of successful extensions: 254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 607615510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)