Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F20
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    30   1.6  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    30   1.6  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    30   1.6  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    30   1.6  
Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/70 (28%), Positives = 23/70 (32%)
 Frame = +3

Query: 543 PSGXXGXPAGGLXXGPXSAXAPXLXRXLXXXGXSXVPXRXAXPPXKXRXGRXPPXPSXPX 722
           P+G  G PA G   GP     P         G +  P     P    + GR  P PS   
Sbjct: 155 PNGNPGAPAQGGGQGPPGPPGP--AGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAP 212

Query: 723 XXXGXXGPXG 752
              G  G  G
Sbjct: 213 GSQGPPGAPG 222


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.5 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/70 (28%), Positives = 23/70 (32%)
 Frame = +3

Query: 543 PSGXXGXPAGGLXXGPXSAXAPXLXRXLXXXGXSXVPXRXAXPPXKXRXGRXPPXPSXPX 722
           P+G  G PA G   GP     P         G +  P     P    + GR  P PS   
Sbjct: 155 PNGNPGAPAQGGGQGPPGPPGP--AGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAP 212

Query: 723 XXXGXXGPXG 752
              G  G  G
Sbjct: 213 GPQGPPGAPG 222


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/70 (28%), Positives = 22/70 (31%)
 Frame = +3

Query: 543 PSGXXGXPAGGLXXGPXSAXAPXLXRXLXXXGXSXVPXRXAXPPXKXRXGRXPPXPSXPX 722
           P G  G PAG    GP  A  P         G    P     P    + G   P P+ P 
Sbjct: 169 PDGNPGSPAG--PSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPP 226

Query: 723 XXXGXXGPXG 752
              G  G  G
Sbjct: 227 GPAGPAGNDG 236



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
 Frame = -3

Query: 751 PXGPXXPXXXXGXDGXGGXRPXRXLXG-----GXAXRXGTXEXPXXXXXRXRXGAXAEXG 587
           P GP  P    G DG  G        G     G A   G    P         GA  + G
Sbjct: 157 PAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGG 216

Query: 586 PXXSPPAGXP 557
           P    PAG P
Sbjct: 217 PGEPGPAGPP 226


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/70 (28%), Positives = 22/70 (31%)
 Frame = +3

Query: 543 PSGXXGXPAGGLXXGPXSAXAPXLXRXLXXXGXSXVPXRXAXPPXKXRXGRXPPXPSXPX 722
           P G  G PAG    GP  A  P         G    P     P    + G   P P+ P 
Sbjct: 169 PDGNPGSPAG--PSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPP 226

Query: 723 XXXGXXGPXG 752
              G  G  G
Sbjct: 227 GPAGPAGNDG 236



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
 Frame = -3

Query: 751 PXGPXXPXXXXGXDGXGGXRPXRXLXG-----GXAXRXGTXEXPXXXXXRXRXGAXAEXG 587
           P GP  P    G DG  G        G     G A   G    P         GA  + G
Sbjct: 157 PAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGG 216

Query: 586 PXXSPPAGXP 557
           P    PAG P
Sbjct: 217 PGEPGPAGPP 226


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/70 (28%), Positives = 22/70 (31%)
 Frame = +3

Query: 543 PSGXXGXPAGGLXXGPXSAXAPXLXRXLXXXGXSXVPXRXAXPPXKXRXGRXPPXPSXPX 722
           P G  G PAG    GP  A  P         G    P     P    + G   P P+ P 
Sbjct: 169 PDGNPGSPAG--PSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPP 226

Query: 723 XXXGXXGPXG 752
              G  G  G
Sbjct: 227 GPAGPAGNDG 236



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
 Frame = -3

Query: 751 PXGPXXPXXXXGXDGXGGXRPXRXLXG-----GXAXRXGTXEXPXXXXXRXRXGAXAEXG 587
           P GP  P    G DG  G        G     G A   G    P         GA  + G
Sbjct: 157 PAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGG 216

Query: 586 PXXSPPAGXP 557
           P    PAG P
Sbjct: 217 PGEPGPAGPP 226


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/70 (28%), Positives = 22/70 (31%)
 Frame = +3

Query: 543 PSGXXGXPAGGLXXGPXSAXAPXLXRXLXXXGXSXVPXRXAXPPXKXRXGRXPPXPSXPX 722
           P G  G PAG    GP  A  P         G    P     P    + G   P P+ P 
Sbjct: 169 PDGNPGSPAG--PSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPP 226

Query: 723 XXXGXXGPXG 752
              G  G  G
Sbjct: 227 GPAGPAGNDG 236



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
 Frame = -3

Query: 751 PXGPXXPXXXXGXDGXGGXRPXRXLXG-----GXAXRXGTXEXPXXXXXRXRXGAXAEXG 587
           P GP  P    G DG  G        G     G A   G    P         GA  + G
Sbjct: 157 PAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGG 216

Query: 586 PXXSPPAGXP 557
           P    PAG P
Sbjct: 217 PGEPGPAGPP 226


>Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical
           protein C09G5.5 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/70 (27%), Positives = 22/70 (31%)
 Frame = +3

Query: 543 PSGXXGXPAGGLXXGPXSAXAPXLXRXLXXXGXSXVPXRXAXPPXKXRXGRXPPXPSXPX 722
           P+G  G PA G   GP     P         G +  P     P    +  R  P PS   
Sbjct: 153 PNGNPGAPAHGGGQGPPGPPGP--AGDAGSPGQAGAPGNPGRPGQSGQRSRGLPGPSGRP 210

Query: 723 XXXGXXGPXG 752
              G  G  G
Sbjct: 211 GPQGPPGAPG 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,098,521
Number of Sequences: 27780
Number of extensions: 104503
Number of successful extensions: 343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)