Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F19
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   178   6e-46
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   178   6e-46
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   2.7  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  178 bits (434), Expect = 6e-46
 Identities = 88/158 (55%), Positives = 104/158 (65%)
 Frame = -1

Query: 586 KKXPXKTHKXXRKXAXXGXXHXXRVSFXVXXXGQKGYHHRXEMNKKXYRIGQGIHKKDGK 407
           K+ P KTH+  RK A  G  H   V + V   G  GY HR ++N K YRIG G    D K
Sbjct: 236 KRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK 292

Query: 406 VIKNNAXTEYDLXEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 227
               NA T++D  EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R
Sbjct: 293 ----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSR 348

Query: 226 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 113
            ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 349 KALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  178 bits (434), Expect = 6e-46
 Identities = 88/158 (55%), Positives = 104/158 (65%)
 Frame = -1

Query: 586 KKXPXKTHKXXRKXAXXGXXHXXRVSFXVXXXGQKGYHHRXEMNKKXYRIGQGIHKKDGK 407
           K+ P KTH+  RK A  G  H   V + V   G  GY HR ++N K YRIG G    D K
Sbjct: 236 KRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK 292

Query: 406 VIKNNAXTEYDLXEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 227
               NA T++D  EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R
Sbjct: 293 ----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSR 348

Query: 226 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 113
            ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 349 KALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 201 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 88
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 134 HGYTQEGSYSRRSCGYHNPS 75
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,056
Number of Sequences: 5004
Number of extensions: 41467
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)