Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_F18
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 151 8e-38
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 29 0.96
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.3
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 3.9
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 9.0
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 9.0
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 9.0
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 9.0
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 9.0
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 9.0
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 151 bits (367), Expect = 8e-38
Identities = 85/198 (42%), Positives = 107/198 (54%)
Frame = -1
Query: 718 VVIPAHNTGLRFQRRPXFFQALXIPTQDFKRGTIEIINDVHILKPGDKVGASEATLLNML 539
V +PA NTG+ + FFQAL IPT+ RGTIEI +DVH++ KVG SEATLLNML
Sbjct: 119 VFVPAGNTGME-PGKTSFFQALGIPTK-ITRGTIEITSDVHLVSKDAKVGPSEATLLNML 176
Query: 538 NISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAP 359
NISPF+YG+ V +YD G +F+PEILD+ EDL + + + A+SL YPTI S
Sbjct: 177 NISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVM 236
Query: 358 HSIANGFKNLLXXXXXXXXXXXXXXTIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXX 179
HS+ N +KNL+ K F+ DPS F
Sbjct: 237 HSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAEA 294
Query: 178 XXXXXXXSDDDMGFGLFD 125
SD+DMGFGLFD
Sbjct: 295 AAEEEEESDEDMGFGLFD 312
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 28.7 bits (61), Expect = 0.96
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 590 QDVYIVDDFNSTPFEILGRDXKSLEKXRSSLEPKA 694
Q +Y+ D P EI+ R+ ++ K S +PKA
Sbjct: 187 QSIYLTRDNQKVPLEIMIREPETESKAEQSAKPKA 221
>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 121
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 497 YLLNNKTI*EWRDVQHVEKGGFRSSNLVTGLQDVYIVDDFNSTPF 631
YL N I EW V HV + V + + +I D NS PF
Sbjct: 69 YLKNCFRILEWEIVSHVGGNELLINRRVIDVNNFFICQDANSGPF 113
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 284 GSFFKLNLCDSSGGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSS 424
G FF + CD + G K + N S N K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 154 DDDMGFGLFD 125
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,956
Number of Sequences: 5004
Number of extensions: 50135
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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