Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F18
         (766 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   233   1e-61
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   233   1e-61
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   233   1e-61
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   233   1e-61
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    32   0.99 
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    32   0.99 

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  233 bits (571), Expect = 1e-61
 Identities = 126/199 (63%), Positives = 138/199 (69%), Gaps = 1/199 (0%)
 Frame = -1

Query: 718 VVIPAHNTGLRFQRRPXFFQALXIPTQDFKRGTIEIINDVHILKPGDKVGASEATLLNML 539
           V+IPA NTGL    +  FFQAL IPT+   +GTIEIINDV ILKPGDKVGASEATLLNML
Sbjct: 121 VIIPAQNTGLG-PEKTSFFQALSIPTK-ISKGTIEIINDVPILKPGDKVGASEATLLNML 178

Query: 538 NISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAP 359
           NISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAP
Sbjct: 179 NISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAP 238

Query: 358 HSIANGFKNLLXXXXXXXXXXXXXXTIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXX 182
           HSIANGFKNLL              TIKE+IKDPSKF                       
Sbjct: 239 HSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAK 298

Query: 181 XXXXXXXXSDDDMGFGLFD 125
                    DDDMGFGLFD
Sbjct: 299 KPESESEEEDDDMGFGLFD 317


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  233 bits (571), Expect = 1e-61
 Identities = 126/199 (63%), Positives = 138/199 (69%), Gaps = 1/199 (0%)
 Frame = -1

Query: 718 VVIPAHNTGLRFQRRPXFFQALXIPTQDFKRGTIEIINDVHILKPGDKVGASEATLLNML 539
           V+IPA NTGL    +  FFQAL IPT+   +GTIEIINDV ILKPGDKVGASEATLLNML
Sbjct: 121 VIIPAQNTGLG-PEKTSFFQALSIPTK-ISKGTIEIINDVPILKPGDKVGASEATLLNML 178

Query: 538 NISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAP 359
           NISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAP
Sbjct: 179 NISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAP 238

Query: 358 HSIANGFKNLLXXXXXXXXXXXXXXTIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXX 182
           HSIANGFKNLL              TIKE+IKDPSKF                       
Sbjct: 239 HSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAK 298

Query: 181 XXXXXXXXSDDDMGFGLFD 125
                    DDDMGFGLFD
Sbjct: 299 KPESESEEEDDDMGFGLFD 317


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  233 bits (571), Expect = 1e-61
 Identities = 126/199 (63%), Positives = 138/199 (69%), Gaps = 1/199 (0%)
 Frame = -1

Query: 718 VVIPAHNTGLRFQRRPXFFQALXIPTQDFKRGTIEIINDVHILKPGDKVGASEATLLNML 539
           V+IPA NTGL    +  FFQAL IPT+   +GTIEIINDV ILKPGDKVGASEATLLNML
Sbjct: 121 VIIPAQNTGLG-PEKTSFFQALSIPTK-ISKGTIEIINDVPILKPGDKVGASEATLLNML 178

Query: 538 NISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAP 359
           NISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAP
Sbjct: 179 NISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAP 238

Query: 358 HSIANGFKNLLXXXXXXXXXXXXXXTIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXX 182
           HSIANGFKNLL              TIKE+IKDPSKF                       
Sbjct: 239 HSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAK 298

Query: 181 XXXXXXXXSDDDMGFGLFD 125
                    DDDMGFGLFD
Sbjct: 299 KPESESEEEDDDMGFGLFD 317


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  233 bits (571), Expect = 1e-61
 Identities = 126/199 (63%), Positives = 138/199 (69%), Gaps = 1/199 (0%)
 Frame = -1

Query: 718 VVIPAHNTGLRFQRRPXFFQALXIPTQDFKRGTIEIINDVHILKPGDKVGASEATLLNML 539
           V+IPA NTGL    +  FFQAL IPT+   +GTIEIINDV ILKPGDKVGASEATLLNML
Sbjct: 121 VIIPAQNTGLG-PEKTSFFQALSIPTK-ISKGTIEIINDVPILKPGDKVGASEATLLNML 178

Query: 538 NISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAP 359
           NISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASAP
Sbjct: 179 NISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAP 238

Query: 358 HSIANGFKNLLXXXXXXXXXXXXXXTIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXX 182
           HSIANGFKNLL              TIKE+IKDPSKF                       
Sbjct: 239 HSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAK 298

Query: 181 XXXXXXXXSDDDMGFGLFD 125
                    DDDMGFGLFD
Sbjct: 299 KPESESEEEDDDMGFGLFD 317


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
            Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = -1

Query: 637  DFKRGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 464
            D ++ T EI ++ ++ +    D+V       LN  +I  F +G  +   YD G ++   I
Sbjct: 768  DLQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGI 826

Query: 463  LDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 329
            LD+     R + QAG+ +++ + +A   P      H   + FKN+
Sbjct: 827  LDLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 868


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = -1

Query: 637 DFKRGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 464
           D ++ T EI ++ ++ +    D+V       LN  +I  F +G  +   YD G ++   I
Sbjct: 531 DLQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGI 589

Query: 463 LDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 329
           LD+     R + QAG+ +++ + +A   P      H   + FKN+
Sbjct: 590 LDLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 631


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,434,598
Number of Sequences: 53049
Number of extensions: 592383
Number of successful extensions: 1498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)