Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_F14
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 36 0.045
10_01_0270 - 2876907-2877547,2877838-2878012 30 1.7
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 29 2.9
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871... 29 3.9
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 3.9
12_01_0302 - 2286171-2286341,2286747-2286968 29 5.1
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.1
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 5.1
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 28 6.8
01_06_0146 + 26969011-26969995,26970878-26970930 28 6.8
12_02_1226 - 27182423-27182768,27182855-27183765 28 9.0
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 28 9.0
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.0
>12_02_1174 - 26696869-26698191
Length = 440
Score = 35.5 bits (78), Expect = 0.045
Identities = 25/81 (30%), Positives = 30/81 (37%)
Frame = -3
Query: 732 AVXPXXIKPPXPXDXGYINPDHQIPDSXHQPPPDLTSISINPLTPX*KEFAPGLKPPLSS 553
A+ P PP P + P H+ P QPPP L P P P +KPP+
Sbjct: 118 ALSPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPP-PPRPPSVKPPVVQ 176
Query: 552 EAPSAYLTPSSLGMXKGVSPP 490
P P SL PP
Sbjct: 177 PKPQ---PPPSLQPPSPPPPP 194
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/78 (28%), Positives = 26/78 (33%)
Frame = -3
Query: 723 PXXIKPPXPXDXGYINPDHQIPDSXHQPPPDLTSISINPLTPX*KEFAPGLKPPLSSEAP 544
P +KPP P Q P PPP S+ P K P PP S P
Sbjct: 167 PPSVKPPVVQPKPQPPPSLQPPSPP--PPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPP 224
Query: 543 SAYLTPSSLGMXKGVSPP 490
+ P + G V P
Sbjct: 225 PPTVPPRTPGDTPAVVEP 242
>10_01_0270 - 2876907-2877547,2877838-2878012
Length = 271
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -3
Query: 684 YINPDHQIPDSXHQPPPDLTSIS---INPLTPX*KEFAPGLKPPLSSEAPSAYLTPS 523
Y NP P + H+PPP T + + TP P K PL + +P Y P+
Sbjct: 170 YKNPSPPAPAAYHKPPPSYTHPAPPVYSYPTPAYSHPTPVYKQPLPTPSPPIYHPPA 226
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = -3
Query: 711 KPPXPXDXGYINPDHQIPDSXHQPPPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYL 532
+PP P +P + +P S PPP S + P P PP S P
Sbjct: 49 QPPPPQAMYQAHPQYPMPGSLPPPPPRPPSFAPENALPPSSPPPPSPPPPPPSSPPPVPP 108
Query: 531 TPSS 520
+P++
Sbjct: 109 SPTA 112
>04_02_0026 +
8708765-8710935,8711021-8711272,8711353-8711463,
8711553-8711634,8711909-8712100
Length = 935
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -3
Query: 660 PDSXHQP-PPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYF 484
P HQP PP L S P P +P +PPL + P S +PP
Sbjct: 490 PSPRHQPSPPPLRSPPRQPTPPP----SPSQQPPLPAPQPVQASPTSPAKQHAPPAPPSV 545
Query: 483 QVNDESQASRLISR 442
Q + + S L+ +
Sbjct: 546 QTSPPTPQSALVEQ 559
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 239 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEVYRQLVDPRHVSSDSFGVYVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 80 RLQRSRKKHGEDLPTGGRPRRKGEKLE*MQREEQ 181
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 72 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Frame = -3
Query: 708 PPXPXDXGYINPDHQIPDSXHQ----PPPDLTSISINPLTPX*KEFAPGLKPPLSSEAPS 541
PP P H+IP PPP SIS P P AP P + + PS
Sbjct: 73 PPPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPS 132
Query: 540 AYLTPSSLGMXKGVSPPYF 484
+ PS + P+F
Sbjct: 133 SSANPSPPDAYPFTNYPFF 151
>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -3
Query: 708 PPXPXDXGYINPDHQIPDSXHQPPPDLTSISINPLTPX*KEFAPGLKPP 562
PP P + GY +Q+P PPP + P P F+ PP
Sbjct: 1139 PPAPYNCGYAGHANQMPLPPPPPPPLPPPPPVAPFHPPGPHFSGPSVPP 1187
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -3
Query: 708 PPXPXDXGYINPDHQIPDSXHQPPPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLT 529
PP P +P P + PPP L + + P TP + P+ S+AP+
Sbjct: 23 PPPPTPHPATDPPPISPQNPTPPPPPLPASAAAPTTPS-PNHSGDPSRPIPSQAPAPPPP 81
Query: 528 PSS 520
P++
Sbjct: 82 PTA 84
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 27.9 bits (59), Expect = 9.0
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Frame = -3
Query: 711 KPPXPXDXGYINPDHQIPDSXHQPPPDLTSISINPLTPX*KEFAPGLKP---PLSSEAPS 541
KP P + D+ +P + +P T + P APG+ P P S AP+
Sbjct: 162 KPEEPPTVAAVQKDNCVPPAAPKPAVPATPSTSPPSNKEYAPAAPGVVPVNQPSSPAAPA 221
Query: 540 ----AYLTPSSLGMXKGVSPPYFQVNDESQA 460
A + PSS GV P Q + + A
Sbjct: 222 GVVPAPVQPSSPAAPAGVVPAPVQPSSPATA 252
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -3
Query: 678 NPDHQIPDSXHQPPPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 499
NP +P S HQ P ++ + P P + + P ++ PS Y+ P S G
Sbjct: 372 NPSTAVPPSVHQQPEEVAA----PYGPPPQSYPPNVR------LPSPYVPPPS-----GP 416
Query: 498 SPPYFQVN 475
+PP++ N
Sbjct: 417 APPFYGPN 424
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,078,248
Number of Sequences: 37544
Number of extensions: 407517
Number of successful extensions: 1209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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