Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F13
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.25 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = +1

Query: 520 PPPPXIPPXPSXPPPXXPSXSXXPXXPPXXQKXXXLPGQPHXP 648
           P    +PP    P P  P+ S     PP       +P  P  P
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446



 Score = 25.0 bits (52), Expect = 0.77
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +1

Query: 454 PXXXPXSXPXXPXXXXXXXSSXPPPPXIPPXPSXPPPXXPS 576
           P   P   P  P        S  PPP  P  P  PP   PS
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGP--PGAPPSQNPS 61



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +1

Query: 520 PPPPXIPPXPSXPPPXXPSXSXXPXXPP 603
           P P   P  P    P  PS    P  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 317 SLISNLXNTCDLTPLPEWSCEQSAWWGACGRVL 219
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 563  GGGXXGXGGMXGGGGXEE 510
            GG   G GG+ G GG  E
Sbjct: 1707 GGSLAGLGGLGGLGGAAE 1724


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 563  GGGXXGXGGMXGGGGXEE 510
            GG   G GG+ G GG  E
Sbjct: 1703 GGSLAGLGGLGGLGGAAE 1720


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 538 PPXPSXPPPXXPSXS 582
           PP P+ PPP  PS S
Sbjct: 338 PPKPAPPPP-PPSSS 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,169
Number of Sequences: 438
Number of extensions: 1980
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)