Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F06
         (792 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0DZB9 Cluster: Os02g0632700 protein; n=1; Oryza sativa...    40   0.072
UniRef50_Q9IBJ1 Cluster: R-LORF1; n=1; Gallid herpesvirus 2|Rep:...    39   0.12 
UniRef50_Q058Z0 Cluster: IP09837p; n=3; Sophophora|Rep: IP09837p...    36   1.5  
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera...    35   2.7  
UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori...    34   4.7  
UniRef50_A2QUZ5 Cluster: Contig An10c0020, complete genome. prec...    33   6.2  
UniRef50_P25159 Cluster: Maternal effect protein staufen; n=4; D...    33   6.2  
UniRef50_UPI0000F1F49A Cluster: PREDICTED: hypothetical protein;...    33   8.2  

>UniRef50_Q0DZB9 Cluster: Os02g0632700 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os02g0632700 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 144

 Score = 39.9 bits (89), Expect = 0.072
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = -1

Query: 309 SAVAAHPVRENRADRLDGXGGRPTGPPND---EITPPARTXNIGAPALRLHLR*GAPPRR 139
           SAVAAHP    R  R+    GR T PP+D   + +PP     +  P+  L      PPRR
Sbjct: 30  SAVAAHPHHRIRRSRIRAGDGRRTSPPSDPPPDASPPPDLSPLSHPSSALSHCPSPPPRR 89

Query: 138 RLCCGRS--NQKRQRVCS 91
               GR    +KR++  S
Sbjct: 90  EGGEGREGVGEKRRKPSS 107


>UniRef50_Q9IBJ1 Cluster: R-LORF1; n=1; Gallid herpesvirus 2|Rep:
           R-LORF1 - Meleagrid herpesvirus 1 (MeHV-1) (Turkey
           herpesvirus)
          Length = 239

 Score = 39.1 bits (87), Expect = 0.12
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -1

Query: 318 GETSAV--AAHPVRENRADRLDGXGGRPTGPPNDEITPPARTXNIGAPALRLHLR*GAPP 145
           G+ SAV  A  P +++   R  G G  P  P   +  PPA+      P    HLR G P 
Sbjct: 46  GQGSAVRTATRPGQDSAPGRRHGRGRTPVAPSGAQRAPPAQ-----GPGSSAHLR-GGPV 99

Query: 144 RRRLCCGRSNQKRQRVCSRTSVC 76
           R      R+ Q+ QR C+R   C
Sbjct: 100 RSTHRAPRAAQRLQRSCARGRAC 122


>UniRef50_Q058Z0 Cluster: IP09837p; n=3; Sophophora|Rep: IP09837p -
           Drosophila melanogaster (Fruit fly)
          Length = 332

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 345 TFXHHANFLPQQILPATXQXTISRVPPLLHDVTPTPTKPXANTRQART 488
           T  H A  +PQQ  P   Q  +   PP +   TPTP  P   + + +T
Sbjct: 232 TLGHQAREVPQQEQPQEKQPCLEPEPPKVRPATPTPKAPPQESAEGQT 279


>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera|Rep:
            Reverse transcriptase - Papilio xuthus
          Length = 1053

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 208  WRRDLVVWRTCRPASXTVXAICPVLADWVGRDRGSLTFGYLCRLTRH 348
            W+R L   R  R  + T+ AICPV   W+ R  G++TF     L+ H
Sbjct: 893  WQRRL---RQTRAGARTIGAICPVFMAWLRRRHGAVTFRLAQVLSGH 936


>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori|Rep:
            Reverse transcriptase - Bombyx mori (Silk moth)
          Length = 1076

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 256  TVXAICPVLADWVGRDRGSLTFGYLCRLTRH 348
            TV A+ PV  DWV R  G LTF  +  LT H
Sbjct: 929  TVEAVYPVFDDWVNRGEGRLTFRLVQVLTGH 959


>UniRef50_A2QUZ5 Cluster: Contig An10c0020, complete genome.
           precursor; n=1; Aspergillus niger|Rep: Contig An10c0020,
           complete genome. precursor - Aspergillus niger
          Length = 298

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +2

Query: 287 TGWAATAEVSPSATCADSQDIXPPCKLLTATNLTSHXAXYNFTGSTSLTRCYXHTDEAXR 466
           T  AAT +   SA+ ADS    P     TA   T+H      T S+S +     + E+  
Sbjct: 113 TAAAATTQAESSASSADSTSAEPTSAATTAAATTAHTTAVQTTSSSSSSESSSSSSESSS 172

Query: 467 EHSSST 484
             S S+
Sbjct: 173 SSSESS 178


>UniRef50_P25159 Cluster: Maternal effect protein staufen; n=4;
           Drosophila|Rep: Maternal effect protein staufen -
           Drosophila melanogaster (Fruit fly)
          Length = 1026

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 357 HANFLPQQILPATXQXTISRVPPLLHDVTPTPTKPXANTRQARTSXHS 500
           ++N+ P+ IL  T +     VPP++ +VTP P +P   T  A T+  S
Sbjct: 206 NSNYAPKAILQNTYRNQKVVVPPVVQEVTPVP-EPPVTTNNATTNSTS 252


>UniRef50_UPI0000F1F49A Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 158

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 477 QARTSXHSXGKTCI-RQRNPNTXXPQHTNAPPLLTSHXP 590
           QAR + HS G+ CI RQ N     PQH +    +  H P
Sbjct: 113 QARANRHSLGRNCIQRQNNIRQRLPQHFSRKHRMVLHQP 151


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,131,390
Number of Sequences: 1657284
Number of extensions: 10896039
Number of successful extensions: 29708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29645
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)