Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F06
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0227 - 23449579-23450459,23450574-23450691                       31   1.4  
07_03_0461 - 18433138-18433257,18433627-18433699,18434459-18434646     30   1.8  
11_05_0086 + 18964493-18965737,18965896-18966360                       29   3.2  
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142     29   4.2  
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302...    28   7.4  
01_05_0230 + 19543410-19543722,19544165-19544238                       28   7.4  

>05_05_0227 - 23449579-23450459,23450574-23450691
          Length = 332

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -1

Query: 267 RLDGXGGRPTGPPNDEITPPARTXNIGAP 181
           R DG GGRP+ P   E T P R    GAP
Sbjct: 231 RGDGGGGRPSAPARREGTDPCRPVLGGAP 259


>07_03_0461 - 18433138-18433257,18433627-18433699,18434459-18434646
          Length = 126

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 418 FHLSYTMLXPHRRSQXRTLVKHAQARTPPEKPASAS 525
           F L +TML P   SQ R  + H+    PP+ PA  S
Sbjct: 47  FTLLHTMLEPKIESQKRFSMPHSSYPPPPDPPAQFS 82


>11_05_0086 + 18964493-18965737,18965896-18966360
          Length = 569

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 237 GPPNDEITPPARTXNIGAPALRLHLR*GAPPRRRL 133
           GPP D   PP  T  + A  L  H R   PP R L
Sbjct: 82  GPPPDPNQPPPFTNVVSAALLARHRRAAVPPLRAL 116


>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
          Length = 534

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 339 HKTFXHHANFLPQQILPATXQXTISRVPPLLHDVTPTPTKPXAN 470
           H+ F    +FLP +I          +VPP LH V P  + P A+
Sbjct: 75  HRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPPAS 118


>01_07_0213 -
           42028941-42029055,42029444-42029480,42029876-42030244,
           42030332-42031201,42051574-42052891
          Length = 902

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 287 TGWAATAEVSPSATCADSQDIXPPCKLLTATNLTSHXAXYNFTGSTSLTRCYXHTDEAXR 466
           TG A+++  + SA  A  +      +LLT+   TSH +  N T   S      H D + R
Sbjct: 680 TGSASSSPATASAAAASKKP-----RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFR 734

Query: 467 E 469
           E
Sbjct: 735 E 735


>01_05_0230 + 19543410-19543722,19544165-19544238
          Length = 128

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 24/64 (37%), Positives = 27/64 (42%)
 Frame = -1

Query: 399 AXWLVRFVAVRSLHGGXMSCESAQVAEGETSAVAAHPVRENRADRLDGXGGRPTGPPNDE 220
           A WL  F+  R L            AEGE    AAHP+R  R  R      RP+ PP   
Sbjct: 16  ASWLPLFL--RRLSSSSRPTAEESRAEGEEREGAAHPLR-LRCRR------RPSPPPAPP 66

Query: 219 ITPP 208
            TPP
Sbjct: 67  STPP 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,708
Number of Sequences: 37544
Number of extensions: 352213
Number of successful extensions: 964
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)