Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F06
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protei...    29   5.0  

>Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical
           protein R166.1 protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 305 AEVSPSATCADSQDIXPPCKLLTATNLTSHXAXYNFTGSTSLTR 436
           A + P+ T   S  + PP    TA   + +    NF+G+ S+TR
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248


>U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protein
           33 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
 Frame = -1

Query: 471 CSRLASSVWX*HRVRE--VEPVKL*XAXWLVRFVAVRSLHGGXMSCESAQVAEGETSAVA 298
           C   A  +W   R  +  +EP++   A       AV    GG  +CE+  +      A A
Sbjct: 56  CRGSAKDIWSEVRTLKTALEPIQNRTARQAYADAAVHGGGGGGGNCEACCLPGPAGPAGA 115

Query: 297 -AHPVRENR--ADRLDGXGGRPTGPPNDEITPP 208
             +P R  +  A  L G  G+P   P + ITPP
Sbjct: 116 PGNPGRPGKPGAPGLPGNPGKPPVQPCEPITPP 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,540
Number of Sequences: 27780
Number of extensions: 264947
Number of successful extensions: 754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)