Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F06
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 336  SAQVAEGETSAVAAHPVRENRADRLDGXGGRPTGP 232
            S +V EG++S VAA         R+   GG    P
Sbjct: 1292 STRVGEGQSSKVAAQVPTNRVPARITSFGGHVVRP 1326



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 56   AKTTYL*HTEVLEHTR*RFWL 118
            AK TY   T++ +H   +FW+
Sbjct: 1269 AKNTYFEATDLQQHVEYQFWV 1289


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 336  SAQVAEGETSAVAAHPVRENRADRLDGXGGRPTGP 232
            S +V EG++S VAA         R+   GG    P
Sbjct: 1288 STRVGEGQSSKVAAQVPTNRVPARITSFGGHVVRP 1322



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 56   AKTTYL*HTEVLEHTR*RFWL 118
            AK TY   T++ +H   +FW+
Sbjct: 1265 AKNTYFEATDLQQHVEYQFWV 1285


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 240 TGPPNDEITPPARTXNIGAPA 178
           T P   EI P  +T + G PA
Sbjct: 305 TAPLGAEIEPSTQTIDFGRPA 325


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 352 TTMQTSYRNKSYQPPRXLQFHGFHLSYTMLXPHRR 456
           TT     + ++ Q    LQ H  HL  T +  H R
Sbjct: 127 TTATGLIKQETLQRHHHLQNHHHHLQSTAVQDHHR 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,589
Number of Sequences: 438
Number of extensions: 3238
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)