Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_F05
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1219 + 27096477-27096590,27096704-27097078 27 1.6
07_03_0177 - 14770777-14772045 26 1.9
07_03_0559 + 19475893-19476783 26 1.9
02_03_0101 + 15233783-15234601 30 2.0
07_03_0558 + 19461369-19462448 26 2.5
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 29 3.4
10_08_0216 - 15942379-15942852,15942956-15943033 25 3.4
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 29 4.5
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 25 5.2
06_03_0516 + 21661696-21662490 28 7.9
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 28 7.9
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 27.1 bits (57), Expect(2) = 1.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 822 RGXGXGXGGGXGFGXXPXGXCGR 754
RG G G GGG G+G G G+
Sbjct: 100 RGGGGGYGGGGGYGGGGGGGYGQ 122
Score = 22.2 bits (45), Expect(2) = 1.6
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 657 GXRGXSWXXGGGXGFGPGXG 598
G G GGG G+G G G
Sbjct: 130 GGGGYGGGRGGGGGYGGGYG 149
>07_03_0177 - 14770777-14772045
Length = 422
Score = 26.2 bits (55), Expect(2) = 1.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 819 GXGXGXGGGXGFGXXPXGXCG 757
G G G GGG GFG G G
Sbjct: 74 GGGGGFGGGGGFGGGGGGGLG 94
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 648 GXSWXXGGGXGFGPGXG 598
G + GGG GFG G G
Sbjct: 387 GGGFGKGGGFGFGVGGG 403
Score = 23.0 bits (47), Expect(2) = 9.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 819 GXGXGXGGGXGFGXXPXGXCG 757
G G G GGG G G G G
Sbjct: 356 GKGGGLGGGGGLGGGGGGGGG 376
Score = 22.6 bits (46), Expect(2) = 1.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 648 GXSWXXGGGXGFGPGXG 598
G GGG GFG G G
Sbjct: 96 GGGGGLGGGGGFGKGGG 112
>07_03_0559 + 19475893-19476783
Length = 296
Score = 26.2 bits (55), Expect(2) = 2.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 819 GXGXGXGGGXGFGXXPXGXCG 757
G G G GGG GFG G G
Sbjct: 76 GGGGGLGGGGGFGGGGGGGLG 96
Score = 26.2 bits (55), Expect(2) = 1.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 819 GXGXGXGGGXGFGXXPXGXCG 757
G G G GGG GFG G G
Sbjct: 158 GGGLGGGGGGGFGGGGGGGIG 178
Score = 22.6 bits (46), Expect(2) = 1.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 648 GXSWXXGGGXGFGPGXG 598
G GGG GFG G G
Sbjct: 200 GGGMGSGGGGGFGGGGG 216
Score = 22.2 bits (45), Expect(2) = 2.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 648 GXSWXXGGGXGFGPGXG 598
G GGG GFG G G
Sbjct: 116 GGGLGGGGGGGFGGGSG 132
>02_03_0101 + 15233783-15234601
Length = 272
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 37 HPGAGLSLNRSQHDAALPSTTPRQERKSSTDYPE-PRHRTELYP 165
H A L +Q P+ TPR+ R+S +PE P H T+ P
Sbjct: 187 HATASLGCAAAQPPQVPPTPTPRRRRRSMMVHPEPPEHTTDGMP 230
>07_03_0558 + 19461369-19462448
Length = 359
Score = 26.2 bits (55), Expect(2) = 2.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 819 GXGXGXGGGXGFGXXPXGXCG 757
G G G GGG GFG G G
Sbjct: 268 GAGGGVGGGGGFGGGGGGGLG 288
Score = 26.2 bits (55), Expect(2) = 2.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 819 GXGXGXGGGXGFGXXPXGXCG 757
G G G GGG GFG G G
Sbjct: 304 GAGGGVGGGGGFGGGGGGGLG 324
Score = 22.2 bits (45), Expect(2) = 2.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 648 GXSWXXGGGXGFGPGXG 598
G GGG GFG G G
Sbjct: 304 GAGGGVGGGGGFGGGGG 320
Score = 22.2 bits (45), Expect(2) = 2.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 648 GXSWXXGGGXGFGPGXG 598
G GGG GFG G G
Sbjct: 340 GAGGGVGGGGGFGGGGG 356
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 88 PSTTPRQERKSSTDYPEPRHRTELYPDLRSRD 183
PS TP ER S+D PR Y R+RD
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRD 396
>10_08_0216 - 15942379-15942852,15942956-15943033
Length = 183
Score = 25.4 bits (53), Expect(2) = 3.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 819 GXGXGXGGGXGFGXXPXGXCGR 754
G G G GGG G+G G G+
Sbjct: 78 GGGGGGGGGGGYGYGAGGGYGQ 99
Score = 22.6 bits (46), Expect(2) = 3.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 657 GXRGXSWXXGGGXGFGPGXG 598
G G GGG G+G G G
Sbjct: 113 GGGGAGGGGGGGYGYGAGGG 132
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 472 SVPEGGRRXRTFGSCXXPSGPVVARYHPRGXAXT 371
+VP+GG RT + P GP A+ PR T
Sbjct: 118 TVPQGGSPRRTVPAQSAPGGPATAQSSPRAATTT 151
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 25.4 bits (53), Expect(2) = 5.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 822 RGXGXGXGGGXGFGXXPXG 766
RG G G GGG G+G G
Sbjct: 50 RGRGGGGGGGGGYGGGGVG 68
Score = 21.8 bits (44), Expect(2) = 5.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 657 GXRGXSWXXGGGXGFGPGXG 598
G G GGG G+G G G
Sbjct: 84 GYGGGGRGGGGGGGYGGGGG 103
>06_03_0516 + 21661696-21662490
Length = 264
Score = 28.3 bits (60), Expect = 7.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 542 SWRPGLGCXPCW 507
SW+PG G PCW
Sbjct: 240 SWKPGTGTAPCW 251
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 599 PXPGPKPXPPPXXQE 643
P P PKP PPP QE
Sbjct: 56 PNPNPKPPPPPPPQE 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.130 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,341,609
Number of Sequences: 37544
Number of extensions: 341052
Number of successful extensions: 2022
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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