Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_F04
(1202 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.034
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 31 0.42
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.56
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.97
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 6.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 6.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 9.1
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 34.3 bits (75), Expect = 0.034
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +1
Query: 124 PSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXAPXKXPP 252
P A P + PP PP P PPP+ P K PP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
Score = 33.1 bits (72), Expect = 0.079
Identities = 21/77 (27%), Positives = 25/77 (32%)
Frame = +1
Query: 64 PXRRXPPXAGXDXPQPPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXAPXK 243
P PP + P P P P +A P PP P PP AP K
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQ--PAAPVK 182
Query: 244 XPPNKTXKKXSFPXXHP 294
PP+ + P P
Sbjct: 183 SPPSAPSLPSAVPPMPP 199
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +1
Query: 103 PQPPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXAPXKXP 249
P PP P P P T+ P PP P T P P + P
Sbjct: 196 PMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKF-PNRGP 243
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 30.7 bits (66), Expect = 0.42
Identities = 17/67 (25%), Positives = 21/67 (31%)
Frame = +1
Query: 118 NXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXAPXKXPPNKTXKKXSFPXXHPX 297
N P P R + P PP P P + P + PP P +P
Sbjct: 560 NVNMPSALSPLRIRSRPSPLSLPPEPLLSPTIDYSATPFPLEPPPESPGPSLQIPSNNPV 619
Query: 298 TTXTTPT 318
T T T
Sbjct: 620 YTNLTDT 626
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.56
Identities = 25/98 (25%), Positives = 29/98 (29%), Gaps = 11/98 (11%)
Frame = +1
Query: 64 PXRRXPPXAGXDXP-----QPPXNXPSPXXAXPKRXTAXHPP------DXXPPTPXXPPP 210
P R P G P + N P+P A P R PP PP P P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 211 TXHXPXXAPXKXPPNKTXKKXSFPXXHPXTTXTTPTXA 324
P P PP+ + P P P A
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPA 461
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/70 (25%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Frame = +1
Query: 49 RKXGYPXRRXPPXAGXDXPQ-PPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXP 225
R P P G P PP S P PP P P PP+
Sbjct: 383 RAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMG 442
Query: 226 XXAPXKXPPN 255
A PP+
Sbjct: 443 APAAPPLPPS 452
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.97
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = +1
Query: 91 GXDXPQPPXNXPS--PXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXAPXKXPP 252
G P P + P P A P + +A PP PP PPP+ P PP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPP--PPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = +1
Query: 79 PPXAGXDXPQPPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXP 225
P + P PP + P P A P A P PP P P+ P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPP--MPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/52 (28%), Positives = 18/52 (34%)
Frame = +1
Query: 79 PPXAGXDXPQPPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXA 234
PP P + P+P P + PP PP P PP P A
Sbjct: 1690 PPVRPQSAAPPQMSAPTP----PPPPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 109 PPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXAPXKXP 249
PP S T PP PP P PP P P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 103 PQPPXNXPSPXXAXPKRXTAXHPPDXXPPTP 195
P PP P P R T+ PP PP P
Sbjct: 49 PLPPPTRRLPRKPLPFRSTSLQPPSSQPPAP 79
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.3
Identities = 23/82 (28%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Frame = +1
Query: 79 PPXAGXDXPQPPXNXPSPXXAXPKRXTAXHP-PDXXPPTPXXPPPTXHXPXXAP-XKXPP 252
PP PP PS PK A P P P P P P P + PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 253 NKTXKKXSFPXXHPXTTXTTPT 318
P P T PT
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVPT 1221
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/63 (31%), Positives = 21/63 (33%)
Frame = +1
Query: 64 PXRRXPPXAGXDXPQPPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXAPXK 243
P R PP PP PS A P + PP P P PP AP
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPS-ADAPPIPVPSTAPP---VPIPTSTPPVPKSSSGAPSA 1062
Query: 244 XPP 252
PP
Sbjct: 1063 PPP 1065
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Frame = +1
Query: 64 PXRRXPPXAGXDXPQPPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPT-XHXPXXAPX 240
P PP PP PS PK A P P P P+ P AP
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS 1156
Query: 241 KXPP 252
PP
Sbjct: 1157 GAPP 1160
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 169 PPDXXPPTPXXPPPTXHXPXXAPXKXPPNKTXKK 270
PP PP P PPP P P PP K+
Sbjct: 5 PPGNPPPPP--PPPGFEPPSQPPPPPPPGYVKKR 36
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 109 PPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPP 210
PP + P A P P D PP P PPP
Sbjct: 167 PPPSFQPPSAAAPATSL---PSDYNPPPPPPPPP 197
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/62 (25%), Positives = 18/62 (29%)
Frame = +1
Query: 64 PXRRXPPXAGXDXPQPPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXAPXK 243
P + P G P PP P P A P+ P PP P P
Sbjct: 479 PSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAP 538
Query: 244 XP 249
P
Sbjct: 539 FP 540
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 139 AXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXAPXK 243
A PKR + P PP PPT AP K
Sbjct: 437 ATPKRSPSATPTSALPPIGKFAPPTTAKAQPAPEK 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.306 0.130 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,061
Number of Sequences: 5004
Number of extensions: 23876
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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