Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F04
         (1202 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   3.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 14/48 (29%), Positives = 17/48 (35%)
 Frame = +1

Query: 106 QPPXNXPSPXXAXPKRXTAXHPPDXXPPTPXXPPPTXHXPXXAPXKXP 249
           QP    P P  +  +   A  P    PP P   PP    P   P + P
Sbjct: 15  QPSSGAPGPQPSPHQSPQA--PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 1.3
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = +1

Query: 82  PXAGXDXPQP-PXNXP-SPXXAXPKRXTAXHPPDXXPPTPXXPPPT 213
           P +G   PQP P   P +P    P   +   PP   P  P    P+
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61



 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 944  PTPTRXQPPQXXTXRTPPXXTXNXAXXRPPXXP 1042
            P P+  Q PQ     +PP  +       PP  P
Sbjct: 23   PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 157 TAXHPPDXXPPTPXXPPPTXHXPXXAPXKXPPNK 258
           +A H P   P T    PP+ H     P +  P++
Sbjct: 297 SACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPHR 330


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 297 HHXHHTDPXAXXRGPQTQ 350
           H+ HH DP      P+TQ
Sbjct: 280 HYGHHPDPGEVDLPPETQ 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.306    0.130    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,220
Number of Sequences: 438
Number of extensions: 3094
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41090841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)