Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_F03
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.80 
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 21/98 (21%), Positives = 30/98 (30%)
 Frame = +2

Query: 449 ETAGXSRTXXERPPPXTXPTPXGKNXAGXXTXRAPXPPGPXTXGXTTHTXXXNPGXXXRX 628
           E+AG   +    P P + P+          +  AP P  P + G  +      P      
Sbjct: 219 ESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPV 278

Query: 629 RXXPXXRXXTXXXXPPTTKRPGXXXXAXPPPRGPPXXP 742
              P     +    PP + R      A    R PP  P
Sbjct: 279 SMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 488 PPXTXPTPXGKNXAGXXTXRAPXPPGPXTXGXTT 589
           P  + PT  G+N  G      P PPGP   G +T
Sbjct: 114 PRRSLPTAAGQNNIGSP----PTPPGPFPGGLST 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,265
Number of Sequences: 5004
Number of extensions: 29130
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)