Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_F03
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 0.48
12_02_1174 - 26696869-26698191 30 2.6
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 30 2.6
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555... 30 2.6
07_01_0798 - 6271261-6271725 30 2.6
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 30 2.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 25 5.0
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 5.9
03_05_1076 + 30180923-30181150,30181746-30181913,30182063-301822... 29 5.9
11_06_0610 - 25449085-25453284 28 7.8
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 28 7.8
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.3 bits (70), Expect = 0.48
Identities = 23/96 (23%), Positives = 27/96 (28%)
Frame = +2
Query: 464 SRTXXERPPPXTXPTPXGKNXAGXXTXRAPXPPGPXTXGXTTHTXXXNPGXXXRXRXXPX 643
S T PPP P P N P PP P + + P P
Sbjct: 538 SPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPP---PPPL 594
Query: 644 XRXXTXXXXPPTTKRPGXXXXAXPPPRGPPXXPXHH 751
PP P + PPP PP +H
Sbjct: 595 PNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNH 630
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/86 (25%), Positives = 24/86 (27%)
Frame = +2
Query: 485 PPPXTXPTPXGKNXAGXXTXRAPXPPGPXTXGXTTHTXXXNPGXXXRXRXXPXXRXXTXX 664
PPP P P G AP PP P ++ P
Sbjct: 690 PPPPPPPLPPANRTNGPGVPSAPPPPPPPPPANRSN-GPSAPAPPLPPPLPAAANKRNPP 748
Query: 665 XXPPTTKRPGXXXXAXPPPRGPPXXP 742
PP G A PPP PP P
Sbjct: 749 APPPPPLMTGKKAPAPPPP--PPQAP 772
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/92 (22%), Positives = 24/92 (26%)
Frame = +2
Query: 467 RTXXERPPPXTXPTPXGKNXAGXXTXRAPXPPGPXTXGXTTHTXXXNPGXXXRXRXXPXX 646
RT PP P + P PP P + P P
Sbjct: 130 RTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPS 189
Query: 647 RXXTXXXXPPTTKRPGXXXXAXPPPRGPPXXP 742
PP+ K P PPP PP P
Sbjct: 190 PPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSP 221
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/86 (24%), Positives = 21/86 (24%)
Frame = +2
Query: 485 PPPXTXPTPXGKNXAGXXTXRAPXPPGPXTXGXTTHTXXXNPGXXXRXRXXPXXRXXTXX 664
PPP P G A P PP P P P
Sbjct: 224 PPPTVPPRTPGDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKPSPPPPSPLPPPPE----D 279
Query: 665 XXPPTTKRPGXXXXAXPPPRGPPXXP 742
PT P PPP PP P
Sbjct: 280 YWSPTAVTPPEPTKPKPPPPSPPPPP 305
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/46 (30%), Positives = 16/46 (34%)
Frame = +1
Query: 637 PXXTXXXPPXRPPXHXTPGXXXTXPTSXXGAPQXAXAPPXXXNXPP 774
P + P PP P T P APQ PP + PP
Sbjct: 474 PQISPVRGPSPPPQQVAPNSPTTLPRQPSPAPQSYLVPPLDEHVPP 519
>10_02_0127 +
5555226-5555446,5555475-5555500,5555702-5555790,
5558112-5558843
Length = 355
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -2
Query: 224 RGDRCYRFFXXHVHHGSEGPDXTQFDVGARNSL*TTSVTWRGVVLGRAASCCDLLRLSPA 45
RG R Y + VH PD ++ +R SL + + ++GV++ R C L +P
Sbjct: 29 RGQRLYLLYSV-VH--CRAPDCEVLEISSRGSLGSPCLVYKGVIMIRERGYCHNLYSAPG 85
Query: 44 PX*FVRGRPXK 12
++ G K
Sbjct: 86 LEWYIPGLEIK 96
>07_01_0798 - 6271261-6271725
Length = 154
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 330 CSAXEPRESGGSEPCGFTSRVSHSXRETRRRXPFGSRRSMLSV 202
C A R GG +P G +R H RE R + R+M+ V
Sbjct: 64 CRAYLLRRCGGGDPPGVRARCCHQLREVAARCRCDALRAMVEV 106
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Frame = +2
Query: 485 PPPXTXPTPXGKNXAGXXTXRAPXPPGPXTXGXTTH---TXXXNPGXXXRXRXXPXXRXX 655
PPP P G G AP P GP T ++ P P
Sbjct: 74 PPPPQRPFGAGPPQQGPFAAAAPPPQGPFTSAPSSQGPFAAAPQPPSQGPFGTAPPPSQG 133
Query: 656 TXXXXPPTTKRPGXXXXAXPPPRGP 730
PP ++ G A PP +GP
Sbjct: 134 PFGTAPPPSQ--GPFGTAPPPSQGP 156
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 25.0 bits (52), Expect(2) = 5.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 713 PPPRGPPXXPXHH 751
PPP PP P HH
Sbjct: 283 PPPAPPPLPPSHH 295
Score = 22.2 bits (45), Expect(2) = 5.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 692 GXXXXAXPPPRGPP 733
G A PPP GPP
Sbjct: 270 GQVPAAPPPPAGPP 283
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/69 (30%), Positives = 22/69 (31%)
Frame = +1
Query: 544 ASPXPPGPXHXGRNNXHXAXKPRXXXXXXXXPXXTXXXPPXRPPXHXTPGXXXTXPTSXX 723
ASP PP P RN+ P P T PP P P T P S
Sbjct: 75 ASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAP--PPTAP-SPY 131
Query: 724 GAPQXAXAP 750
AP P
Sbjct: 132 SAPSPTPTP 140
>03_05_1076 +
30180923-30181150,30181746-30181913,30182063-30182281,
30182827-30182872,30183708-30183943,30184065-30184079,
30185749-30186061,30186189-30186403,30186598-30186600
Length = 480
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = -1
Query: 375 AWGX-RGXPXRIRARICSAXEPRESGGSEPCGFTSRVSHSXRETRRRXPFGSRRSMLSVF 199
+WG +G ++ R+ + PRE G + G E RRR R+
Sbjct: 287 SWGKIKGSAKPVKLRL-NKFIPREQIGEDALGGAGSAGSDSSEDRRRRKKRGRKGRDKEE 345
Query: 198 XXTRASRLRRSGYXSVRCRGSE 133
R R RRS Y S GS+
Sbjct: 346 RRDRRRRRRRSKYGSDSEEGSD 367
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 7/109 (6%)
Frame = +2
Query: 446 PETAGXSRTXXERPP-PXTXPTPXGKNXAGXXTXRAPXPPGPXTXGXTT----HTXXXNP 610
P + G E P P PTP + + PP P G T+ + P
Sbjct: 455 PTSHGPPPPEEESPEEPPEEPTPSPTPSSPESPAKMAPPPAPAIKGVTSPPAEYGAPPPP 514
Query: 611 GXXXRXRXXPXXRXXTXXXXPPTTKRPGXXXXAXPPPRG--PPXXPXHH 751
+ + PPT P + PPP G PP H
Sbjct: 515 SSGWLPKSPERKKAPPPQAEPPTEYSPPATPESSPPPEGKSPPTPTASH 563
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 671 PPTTKRPGXXXXAXPPPRGPPXXPXHH 751
PP + RP PPP PP P H
Sbjct: 16 PPFSSRPRVVGPPPPPPSDPPPPPPPH 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,051
Number of Sequences: 37544
Number of extensions: 338110
Number of successful extensions: 1197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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