Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_E24
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.26
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.4
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 7.3
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.26
Identities = 30/139 (21%), Positives = 36/139 (25%), Gaps = 5/139 (3%)
Frame = -3
Query: 809 PPPXKXXXXRKXP-PPEXTXXXXPPGKXXDPXXPGXPGXENAXRXPXPPPXKXLKXXEXX 633
PPP + P PP+ PP P P ++ R PP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Query: 632 XXXPPPXXXXXXX---PXXXPPXXXXGPEPXXPPKKXPXXPKXXPXT-XXPXNPXKSXXX 465
PP P PP P PP P P P P + +
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459
Query: 464 PRXXXXXXPRPTRNSXXPP 408
P P P PP
Sbjct: 460 PAGMPAAPPLPPAAPAPPP 478
Score = 27.5 bits (58), Expect = 2.4
Identities = 24/89 (26%), Positives = 25/89 (28%), Gaps = 9/89 (10%)
Frame = -1
Query: 808 PPPXKXPXXGXPPPP--------RXP-XPXAXPGXRXIPXXXXXRXXKTPXEXXXPPPXK 656
PPP P G PPP P P A PG +T PP
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 655 X*KXXRXXPXXPPPGXPXKXPPKXXPPXP 569
P PP P P PP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAP--AAPPLP 450
Score = 27.1 bits (57), Expect = 3.2
Identities = 29/132 (21%), Positives = 38/132 (28%), Gaps = 7/132 (5%)
Frame = -3
Query: 782 RKXPPPEXTXXXXPPGKXXDPXXPGXPGXENAXRXPXPPPXKXLK------XXEXXXXXP 621
+K PPP PP + P G N+ P PPP + + P
Sbjct: 308 KKRPPPPP-----PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362
Query: 620 PPXXXXXXXPXXXPPXXXXGPEPXXPPKKXPXXP-KXXPXTXXPXNPXKSXXXPRXXXXX 444
PP PP PP P P + P N ++ P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422
Query: 443 XPRPTRNSXXPP 408
P P+ PP
Sbjct: 423 LP-PSAPPSLPP 433
Score = 23.4 bits (48), Expect(2) = 5.5
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -1
Query: 805 PPXKXPXXGXPPPPRXPXP 749
PP + P P PP P P
Sbjct: 241 PPERVPSLSAPAPPPIPPP 259
Score = 21.0 bits (42), Expect(2) = 5.5
Identities = 8/21 (38%), Positives = 8/21 (38%)
Frame = -1
Query: 631 PXXPPPGXPXKXPPKXXPPXP 569
P PPP P PP P
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRP 274
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/81 (24%), Positives = 20/81 (24%), Gaps = 2/81 (2%)
Frame = -1
Query: 805 PPXKXPXXGXPPPP--RXPXPXAXPGXRXIPXXXXXRXXKTPXEXXXPPPXKX*KXXRXX 632
PP P PP P P P P P PP
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 631 PXXPPPGXPXKXPPKXXPPXP 569
P G P PP PP P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVP 1201
Score = 25.8 bits (54), Expect = 7.3
Identities = 23/85 (27%), Positives = 25/85 (29%), Gaps = 6/85 (7%)
Frame = -1
Query: 805 PPXKXPXXGXPPPP----RXPXPXAXPGXRXIPXXXXXRXXKTPXEXXXPPPXKX*KXXR 638
PP P G PP P P P G +P TP P P K
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAK--- 1235
Query: 637 XXPXXPPPG--XPXKXPPKXXPPXP 569
P P P P P+ P P
Sbjct: 1236 -APPVPAPSSEAPSVSTPRSSVPSP 1259
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = -1
Query: 691 TPXEXXXPPPXKX*KXXRXXPXXPPPGXPXKXPPKXXPPXP 569
TP P P P PPPG PP PP P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/66 (27%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Frame = -3
Query: 809 PPPXKXXXXRKXPPPEXTXXXXP-PGKXXDPXXPGXPGXENAXRXPXPPPXKXLKXXEXX 633
PPP P P P P P P PG A P PPP +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 632 XXXPPP 615
P P
Sbjct: 792 YYAPAP 797
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/54 (27%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = -3
Query: 683 RXPXPPPXKXL--KXXEXXXXXPPPXXXXXXXPXXXPPXXXXGPEPXXPPKKXP 528
+ P PPP + PPP P PP G P PP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/77 (23%), Positives = 20/77 (25%)
Frame = -3
Query: 782 RKXPPPEXTXXXXPPGKXXDPXXPGXPGXENAXRXPXPPPXKXLKXXEXXXXXPPPXXXX 603
+ PPP P P P P P PPP + PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGP---PPPPPPPGVAGAGPPPPPPPPPAVS 786
Query: 602 XXXPXXXPPXXXXGPEP 552
P PEP
Sbjct: 787 AGGSRYYAPAPQAEPEP 803
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 743 PPGKXXDPXXPGXPGXENAXRXPXPPPXKXLK 648
PPG P P PG E + P PPP +K
Sbjct: 5 PPGNPPPPPPP--PGFEPPSQPPPPPPPGYVK 34
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 319 LRSLISNLSNTCDLTPLPEWSCEQSAW 239
+RS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,790
Number of Sequences: 5004
Number of extensions: 22383
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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