Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_E19
(1346 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 40 0.001
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 36 0.013
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 33 0.090
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.12
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.21
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.21
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 31 0.48
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.84
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 1.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 3.4
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 28 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 39.5 bits (88), Expect = 0.001
Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Frame = +2
Query: 1106 TPPXXLPXKPPP--PG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPS--PAXPXVRXPP 1273
TPP P PP P P AP P PP P P P LP+ PA P + P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL---P 470
Query: 1274 PRGAXSXPXTQPGRAXP 1324
P P P A P
Sbjct: 471 PAAPAPPPAPAPAPAAP 487
Score = 33.5 bits (73), Expect = 0.068
Identities = 33/131 (25%), Positives = 36/131 (27%), Gaps = 2/131 (1%)
Frame = +2
Query: 923 PRLPPXXENPXXGEXXFPKXPRXGXPPWGPLCATFXWGXPPPFKXXFXXKKXGXLRXVLK 1102
P PP + G P R PP P A PPP L
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP----------------LS 380
Query: 1103 XTPPXXLPXKPPP--PG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPP 1276
+ P PPP PG P P PP PP P P P
Sbjct: 381 SSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Query: 1277 RGAXSXPXTQP 1309
GA + P P
Sbjct: 441 MGAPAAPPLPP 451
Score = 28.3 bits (60), Expect = 2.6
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Frame = +2
Query: 1130 KPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXV-RXP-PPRGAXSXPXT 1303
K PPP P PS P PP P P P PP+G + P
Sbjct: 309 KRPPP----PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Query: 1304 QPGRAXPSXKXPPP 1345
P A + + PPP
Sbjct: 365 PPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/74 (24%), Positives = 22/74 (29%)
Frame = +2
Query: 1124 PXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPPRGAXSXPXT 1303
P PP P + P+ P PP + P PP R P
Sbjct: 268 PNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPI 327
Query: 1304 QPGRAXPSXKXPPP 1345
G + S PPP
Sbjct: 328 GNGSSNSSLPPPPP 341
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 35.9 bits (79), Expect = 0.013
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +2
Query: 1178 PXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPPRGAXSXPXTQPGRAXPSXKXPPP 1345
P PP P PP + +P P PPP P P A P PPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPP----PPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 35.5 bits (78), Expect = 0.017
Identities = 25/65 (38%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Frame = +2
Query: 1133 PPPPG*XXPVAP--SXXPXXXCPXPPXXPXK-PXPPXLPS-PAXPXVRXPPPRGAXSXPX 1300
P P PV P + P P PP P P PP P PA P PPP A S P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Query: 1301 T-QPG 1312
PG
Sbjct: 1743 VPNPG 1747
Score = 35.5 bits (78), Expect = 0.017
Identities = 21/59 (35%), Positives = 23/59 (38%)
Frame = +2
Query: 1109 PPXXLPXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPPRGA 1285
PP PPPP P PS P P P PP LP+ + P V P R A
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPM------PAGPPSAPPPPLPASSAPSVPNPGDRSA 1751
Score = 30.3 bits (65), Expect = 0.64
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Frame = +2
Query: 1124 PXKPPPPG*XXPV-APSXXPXXXCPX---PPXXPXKPXPPXLPSPA--XPXVRXPPPRGA 1285
P +P PG APS P P PP P P P +PS A P P +
Sbjct: 1457 PVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPS 1516
Query: 1286 XSXPXTQPGRA-XPSXKXPPP 1345
+ P +Q A PS P P
Sbjct: 1517 STLPPSQSSFAHVPSPAPPAP 1537
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 33.1 bits (72), Expect = 0.090
Identities = 28/102 (27%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Frame = +2
Query: 974 PKXPRXGXPPWGPLCATFXWGXPPPFKXXFXXKKXGXLRXVLKXTPPXXLPXKPPPPG*X 1153
P+ P PP P+ PP R + P P P PP
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEA--PSVPQPPAAP 641
Query: 1154 X-PVAPSXXPXXXCPXPPXXPXKPXPPXLP-SPAXPXVRXPP 1273
P PS P P P P PP P P P V PP
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPP 683
Score = 31.5 bits (68), Expect = 0.28
Identities = 19/62 (30%), Positives = 20/62 (32%)
Frame = +2
Query: 1157 PVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPPRGAXSXPXTQPGRAXPSXKX 1336
PVAP P PP P P P +P P V P P PS
Sbjct: 578 PVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVP-SVPQRPAVPVVPEAPSVPQ 636
Query: 1337 PP 1342
PP
Sbjct: 637 PP 638
Score = 30.7 bits (66), Expect = 0.48
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = +2
Query: 1112 PXXLPXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLP-SPAXPXVRXPP 1273
P L PP P PS P P P P PP P +P P V P
Sbjct: 569 PEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRP 623
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +2
Query: 1121 LPXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLP-SPAXPXVRXPP 1273
+P +P P P A S P P P P PP P P P V PP
Sbjct: 559 VPQRPAVP--VVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPP 608
Score = 27.9 bits (59), Expect = 3.4
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +2
Query: 1109 PPXXLPXKPPPPG*X-XPVAPSXXPXXXCPXPPXXPXKPXPPXLP-SPAXPXVRXPP 1273
P P P PP P APS P P P P P P P P V P
Sbjct: 507 PSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRP 563
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +2
Query: 1121 LPXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLP 1240
+P +P P P APS P P P P PP +P
Sbjct: 649 VPQRPAVP--VVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +2
Query: 1121 LPXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPS-PAXPXVRXPP 1273
+P P P P P P PP P P P +P P P V P
Sbjct: 553 VPEAPSVP--QRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAP 602
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.12
Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Frame = +2
Query: 1124 PXKPPP---PG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPA-XPXVRXPP-PRGAX 1288
P PPP P P P+ P P P P P P P V PP P +
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119
Query: 1289 SXPXTQPGRAXPSXKXP 1339
+ P +P A P P
Sbjct: 1120 APPVPKPSVAAPPVPVP 1136
Score = 31.5 bits (68), Expect = 0.28
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Frame = +2
Query: 1109 PPXXLP--XKPPPPG*XXPVAPSXXPXXXCPXPP---XXPXKPXPPXLPSPAXPXVRXPP 1273
PP P PP P V P P P P P P P P P V PP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 1274 -PRGAXSXPXTQPGRAXPSXKXP 1339
P + + P +P A P P
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 30.7 bits (66), Expect = 0.48
Identities = 26/84 (30%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Frame = +2
Query: 1109 PPXXLPXKPPPPG*XXPVAPSXXPXXXCPXPPXX----PXKPXPPXLPSPAXPXVRXPPP 1276
PP LP PP AP P P P P P PS P + P P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSI--PAP 1079
Query: 1277 RGAXSXPXTQ--PGRAXPSXKXPP 1342
GA P P PS PP
Sbjct: 1080 SGAPPVPAPSGIPPVPKPSVAAPP 1103
Score = 30.7 bits (66), Expect = 0.48
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Frame = +2
Query: 1109 PPXXLPXKPPP---PG*XXPVAPSXXPXXXCPXPP-XXPXKPXP----PXLPSPAXPXVR 1264
PP +P PP P P P+ P P P P P P +P PA
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 1265 XPPPRGAXSXPXTQPGRAXPSXKXPPP 1345
PPP + + P +P P PPP
Sbjct: 1191 VPPP--SEAPPVPKPSVGVP--PVPPP 1213
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/77 (27%), Positives = 23/77 (29%)
Frame = +2
Query: 1109 PPXXLPXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPPRGAX 1288
PP P PP P PP P PP +P P+ PPP A
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP-VPKPSVGVPPVPPPSTAP 1217
Query: 1289 SXPXTQPGRAXPSXKXP 1339
P P P P
Sbjct: 1218 PVPT--PSAGLPPVPVP 1232
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/68 (30%), Positives = 25/68 (36%)
Frame = +2
Query: 1136 PPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPPRGAXSXPXTQPGR 1315
PPP PV P PP P PP +P+P+ P P A + P P
Sbjct: 1192 PPPSEAPPV-----PKPSVGVPPVPPPSTAPP-VPTPSAGLPPVPVPT-AKAPPVPAPSS 1244
Query: 1316 AXPSXKXP 1339
PS P
Sbjct: 1245 EAPSVSTP 1252
Score = 27.1 bits (57), Expect = 5.9
Identities = 21/79 (26%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Frame = +2
Query: 1109 PPXXLPXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPP-PRGA 1285
P P P P PV P P P P P P P PP P +
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223
Query: 1286 XSXPXTQPGRAXPSXKXPP 1342
P P+ K PP
Sbjct: 1224 AGLPPV----PVPTAKAPP 1238
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.21
Identities = 23/87 (26%), Positives = 28/87 (32%)
Frame = +2
Query: 1085 LRXVLKXTPPXXLPXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVR 1264
LR + K + P P PP + P PP P P +PS A P
Sbjct: 112 LRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPAS--APPIPSKAPPIPS 169
Query: 1265 XPPPRGAXSXPXTQPGRAXPSXKXPPP 1345
PP + P P A PP
Sbjct: 170 SLPPPAQPAAPVKSPPSAPSLPSAVPP 196
Score = 30.3 bits (65), Expect = 0.64
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Frame = +2
Query: 1109 PPXXLPXKP----PPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPP 1276
PP P +P P P P+ P PP P P +P+ P P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 1277 RGAXSXPXTQPGRAXPSXK 1333
P +Q A S +
Sbjct: 199 PKVPPPPLSQAPVANTSSR 217
Score = 26.6 bits (56), Expect = 7.8
Identities = 22/78 (28%), Positives = 22/78 (28%)
Frame = +3
Query: 255 PXXXPPXXXXXPXPXXPXXXXPXXXXAXXXPXPXXXPXXXXXXPXXXPPXXXXLXXAXXP 434
P P P P P P A P P P PP L A P
Sbjct: 139 PPTSAPPRPSIPPPS-PASAPPIPSKAPPIPSSLPPPAQPAA-PVKSPPSAPSLPSAVPP 196
Query: 435 XXPPXPPXPPXXGXPPPN 488
P PP PP P N
Sbjct: 197 MPPKVPP-PPLSQAPVAN 213
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +2
Query: 1133 PPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPP 1276
PPPP P P+ P P P P PP P A PPP
Sbjct: 734 PPPPAVIVPT-PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 30.7 bits (66), Expect = 0.48
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +2
Query: 1130 KPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSP-----AXPXVRXPPP 1276
K PPP + P+ P P PP P PP P P A P PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPI-PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.48
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +2
Query: 1211 PXKPXPPXLPSPAXPXVRXPPP---RGAXSXPXTQPGRAXPSXKXPPP 1345
P P +P+PA + PPP G P PG A PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +2
Query: 1166 PSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPPRGAXSXPXTQP 1309
P P P P P P PP P P PPP A + P P
Sbjct: 733 PPPPPAVIVPTPAPAPI-PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/63 (33%), Positives = 24/63 (38%)
Frame = +2
Query: 1088 RXVLKXTPPXXLPXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPAXPXVRX 1267
+ +LK P PPPP P P+ P P PP P PP P P
Sbjct: 726 KLLLKSPP-------PPPPAVIVP-TPAPAP---IPVPPPAPIMGGPPPPPPPPGVAGAG 774
Query: 1268 PPP 1276
PPP
Sbjct: 775 PPP 777
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 396 PPXXXXLXXAXXPXXPPXPPXPPXXGXPPP 485
PP + P P PP P G PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +2
Query: 1094 VLKXTP-PXXLPXKPPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPP 1231
V+ TP P +P PP P P P P PP P P PP
Sbjct: 739 VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP--PPPPPPP 783
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 30.7 bits (66), Expect = 0.48
Identities = 24/114 (21%), Positives = 31/114 (27%)
Frame = +2
Query: 1001 PWGPLCATFXWGXPPPFKXXFXXKKXGXLRXVLKXTPPXXLPXKPPPPG*XXPVAPSXXP 1180
PW ++ P P++ + L PP P + V P
Sbjct: 425 PWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAP 484
Query: 1181 XXXCPXPPXXPXKPXPPXLPSPAXPXVRXPPPRGAXSXPXTQPGRAXPSXKXPP 1342
P P PP +P P P P P PG A P P
Sbjct: 485 FIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAP 538
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.84
Identities = 25/75 (33%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Frame = -3
Query: 552 PPKGXGFFFXXGFLGXNPKKXSLGGGXXFXGGXGGXGGG------GXXGRGXXXXXXGXX 391
PP G G F GF G + GG F GG GG GG G G G G
Sbjct: 200 PPPGPGGF--GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Query: 390 XXGXXPXXXGXXGGG 346
G G G G
Sbjct: 258 PGGFGGGPGGHGGPG 272
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/61 (34%), Positives = 21/61 (34%)
Frame = -3
Query: 483 GGGXXFXGGXGGXGGGGXXGRGXXXXXXGXXXXGXXPXXXGXXGGGXXXGXXXXXGXXGX 304
GGG GG GG GG G G G G G GGG G G G
Sbjct: 187 GGGF---GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG-PGGFEGGPGGFGG 242
Query: 303 G 301
G
Sbjct: 243 G 243
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = -3
Query: 483 GGGXXFXGGXGGXGG-GGXXGRGXXXXXXGXXXXGXXPXXXGXXG-GGXXXGXXXXXGXX 310
GG G GG GG GG G G G G G G GG G G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Query: 309 GXG 301
G G
Sbjct: 255 GGG 257
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.7 bits (61), Expect = 1.9
Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Frame = -3
Query: 1281 PRGGGXRTXGXAGEG--RXGGXGLXGXXGGXGH-XXXGXXXGATGXXXPGG--GGFXGRX 1117
P+G G G G R G G G GG G G G GG GGF G
Sbjct: 127 PKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGS 186
Query: 1116 XGG 1108
GG
Sbjct: 187 RGG 189
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 480 GGXXFXGGXGGXGGGGXXGRG 418
GG GG GG GGG GRG
Sbjct: 457 GGRGGFGGRGGFGGGRGRGRG 477
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +2
Query: 1133 PPPPG*XXPVAPSXXPXXXCPXPPXXPXKPXPPXLPSPA 1249
PPPP P A + P P PP P+PA
Sbjct: 366 PPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPA 404
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 1109 PPXXLPXKPPPPG*XXPVAPSXXP 1180
PP P PPPPG P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,230
Number of Sequences: 5004
Number of extensions: 31274
Number of successful extensions: 297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 741217394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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