Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_E10
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.70 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 41  SLNRSQHDAALPSTTPRQERKSST 112
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 43  SQQIAARRCSTEHNTPPGTEVVYRLFRAPDIELS 144
           S Q + +R STE   P GT  +Y   +   IELS
Sbjct: 534 SGQTSVQRASTEFGIPTGT--LYGRCKREGIELS 565


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 531 PPXPPFXGGE 560
           PP PP  GGE
Sbjct: 376 PPPPPIRGGE 385


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 38  LSLNRSQHDAALPSTTPRQERKSSTDYSEPPTSN*VXSGPSE 163
           LSL+R     A   +      K +T + E  + N + SGP E
Sbjct: 18  LSLDRRARRGAADLSLAGNATKVNTVHEEESSLNDLFSGPEE 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,078
Number of Sequences: 438
Number of extensions: 2692
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)