Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_E07
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    42   9e-05
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    31   0.23 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   2.8  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   4.9  

>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = -3

Query: 199 IQSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVKV 83
           I  GK+K K  V +G +   +AFIGML G+N GK +VK+
Sbjct: 308 IAEGKIKYKCDVYDGLESAPEAFIGMLQGKNSGKTIVKI 346


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +3

Query: 72  VLCYTLTTAFP*FSPA---SIPIKASKSLSNPSV-TCSFTFNFPL*IQGNDFCKRLRLII 239
           ++C++L +AF   SP    S   K  KS  + S+ TC   F F   I+    C    LII
Sbjct: 9   IVCFSLVSAFKDTSPIFLFSTNSKLPKSSDDSSISTCPMMF-FDAAIEALSTCNTATLII 67

Query: 240 PAPNEKTFDFDL 275
             P  +  DF L
Sbjct: 68  HQPGLEVNDFQL 79


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +1

Query: 175 LLSISHSESKEMISANAFD*SFQRQTRKPSTLIWLNTKLGCRIVALGNLVR 327
           L SI   E + +I     D    R T  P     L   L CR+ +L NLVR
Sbjct: 483 LRSIKKPELERIIVDLGMDILNSRSTHLPPLFASLMQHLSCRLNSLNNLVR 533


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 329 DLTKLPKATI-LQPSLVFNQIKVEGFLVWR 243
           + TKL K+ I    +LVF  I V GF+ WR
Sbjct: 292 NFTKLEKSIIGAFAALVFKDIFVYGFIAWR 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,854
Number of Sequences: 5004
Number of extensions: 31691
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)