Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_E07
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667... 41 0.001
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 38 0.006
04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787 37 0.019
01_06_1630 + 38753016-38753209,38753904-38754039,38754291-387544... 33 0.24
12_01_0756 + 6869100-6869327,6869943-6870123,6870233-6870399,687... 31 0.73
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 31 1.3
12_01_0759 + 6894556-6894628,6894653-6894738,6895039-6895121,689... 29 2.9
01_06_1628 + 38745964-38746480,38747116-38747282,38747325-387474... 29 2.9
02_04_0350 + 22234632-22235145,22235277-22236209,22237253-222373... 28 6.8
>06_03_0679 -
23464009-23464381,23464804-23464886,23466537-23466703,
23466821-23467007,23467093-23467311
Length = 342
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = -3
Query: 202 WIQSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVKV 83
WI+ GK++V E +++G + + AF + +G+N GK +VK+
Sbjct: 302 WIRQGKVQVIEDISDGLESVPSAFAALFSGDNIGKKMVKL 341
Score = 31.1 bits (67), Expect = 0.96
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 444 GVXWYFDDVGGXIXXQIISXMXXYGXVSVC 355
G+ YFD+VGG ++ M YG V++C
Sbjct: 224 GIDIYFDNVGGETLEAALANMNTYGRVALC 253
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = -3
Query: 202 WIQSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVKV 83
+++ GK+ V + V +G +K +A IGM +G N GK +V V
Sbjct: 317 YLKEGKVTVLQDVVKGIEKASEALIGMFSGRNVGKLLVAV 356
>04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787
Length = 345
Score = 36.7 bits (81), Expect = 0.019
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -3
Query: 217 QKSFPWIQSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVKV 83
+K+ +++ GK+ E V EG + A IG+ +G N GK VV V
Sbjct: 298 EKAARYVKEGKIAYVEDVAEGLENAPAALIGLFSGRNVGKQVVVV 342
>01_06_1630 +
38753016-38753209,38753904-38754039,38754291-38754404,
38755053-38755112,38755223-38755252,38755523-38756206
Length = 405
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 241 GMISRRRLQKSFPWIQSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGK 98
GM+S+ L + GK+ E ++ G + AF+G+ +G+N GK
Sbjct: 100 GMVSQNALTDPVKHYRDGKIVYVEDMSIGLENAPAAFVGLFSGKNVGK 147
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 444 GVXWYFDDVGGXIXXQIISXMXXYGXVSVC 355
G+ YF++VGG + ++ M +G ++VC
Sbjct: 70 GIDIYFENVGGPMLDVVLLNMRTHGRIAVC 99
>12_01_0756 +
6869100-6869327,6869943-6870123,6870233-6870399,
6870523-6870605,6870716-6871094
Length = 345
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 202 WIQSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVKV 83
+++ GK+ E + EG + A IG+ G N GK +V +
Sbjct: 303 YLREGKVVYVEDIVEGLEAAPAALIGLFTGRNVGKQLVTI 342
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 444 GVXWYFDDVGGXIXXQIISXMXXYGXVSVC 355
G+ YFD+VGG + ++ M G +++C
Sbjct: 225 GIDIYFDNVGGAMLDAVLPNMRIGGKITIC 254
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 202 WIQSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVKV 83
+++ GK+ E V EG D A I + G N GK +V +
Sbjct: 304 YLKEGKVAYVEDVVEGLDAAPAALIKLFTGRNVGKQLVAI 343
>12_01_0759 +
6894556-6894628,6894653-6894738,6895039-6895121,
6895278-6895650
Length = 204
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 202 WIQSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVKV 83
+++ GK+ E + +G D A IG+ G N GK +V +
Sbjct: 164 YLREGKVTYLEDIVQGLDAAPAALIGIYNGLNVGKQLVAI 203
>01_06_1628 +
38745964-38746480,38747116-38747282,38747325-38747440,
38747718-38748114
Length = 398
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 444 GVXWYFDDVGGXIXXQIISXMXXYGXVSVC 355
G+ YF++VGG + ++ M +G ++VC
Sbjct: 272 GIDIYFENVGGPMLDAVLLNMRTHGRIAVC 301
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 196 QSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVKV*HKTYYYNF 56
+ GK+ E ++ G + A +G+ +G+N GK VV V + + F
Sbjct: 352 RDGKIVYVEDMSIGLENAPAALVGLFSGKNVGKKVVCVSQELSQFTF 398
>02_04_0350 +
22234632-22235145,22235277-22236209,22237253-22237340,
22237859-22237865
Length = 513
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 75 LCY-TLTTAFP*FSPASIPIKASKSLSNPSVTC 170
+CY T+TT P F+ + + S++ P VTC
Sbjct: 89 ICYSTMTTCLPHFTKLLVDLDGSRAAGIPPVTC 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,867
Number of Sequences: 37544
Number of extensions: 226580
Number of successful extensions: 473
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -