Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_E06
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     32   0.71 
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     31   1.6  
12_02_1057 + 25733376-25735439                                         29   5.0  
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141...    29   6.6  
12_01_0695 - 5928738-5929241                                           28   8.7  

>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 312 TRCSSCLKSTPCSRRMVCPGTR*VEHN 232
           T C  CL   P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 312 TRCSSCLKSTPCSRRMVCPGTR 247
           TRC  CL   P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 312 TRCSSCLKSTPCSRRMVCPGTR*VEHN 232
           T+C  CL   P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>12_02_1057 + 25733376-25735439
          Length = 687

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 312 TRCSSCLKSTPCSRRMVCPGTR*VEHN 232
           T+C  CL   P     VCPG+R  + N
Sbjct: 93  TQCQECLAGAPAGIVQVCPGSRTADAN 119


>04_01_0129 +
           1408408-1409055,1409107-1410013,1410145-1410294,
           1419174-1419634,1419683-1419999,1420114-1420477
          Length = 948

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 812 GVPPXXGTFNPQVLFSNRDPPXXXPXXSSGSXV 714
           G PP   T +P +L SN+D P        G+ V
Sbjct: 901 GQPPFTVTIDPSILLSNKDTPYSYSDHKEGTIV 933


>12_01_0695 - 5928738-5929241
          Length = 167

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -2

Query: 812 GVPPXXGTFNPQVLFSNRDPPXXXPXXSSGSXVEXPXTXT 693
           G PP   T +P +L SN D P        G+ V      T
Sbjct: 120 GQPPFTVTIDPSILLSNEDTPYSRSDHKEGTIVRRKYVRT 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,985,638
Number of Sequences: 37544
Number of extensions: 289806
Number of successful extensions: 500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)