Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_E05
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.61 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.3  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   5.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
 Frame = +3

Query: 648  SSPXGXXSPTTPATXXRXPPPXK-PPXXQRSPXQXPPNXXAQHPPXTXHP 794
            ++P    +PT P      PPP   PP     P   PP   A   P   +P
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +2

Query: 701  PTPPXTSXXPTVPQXXPPQXPSXTPPXNXAPXRXAXQXAA 820
            P  P ++  P +    PP  P   PP   AP   A   +A
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSA 1730


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +1

Query: 667 PAPXXPXRPXGXHPPX-NLXXXNGPPXXAPPTAXXNTPP 780
           P P  P R     PP  N    + PP   PP+   + PP
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 255 GGHLYVLGLQPFEGGKDISLEIXKW-VGVVVSP 160
           G +L  + L PF G  ++SL +  W VGV+  P
Sbjct: 60  GLYLVSVALSPFIGCSNVSLRLINWLVGVIGLP 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,619
Number of Sequences: 5004
Number of extensions: 16966
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)