Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_E04
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    35   8e-04
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.27 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.63 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = -2

Query: 309 VALGXACVEVVGALFALCLANSI---ERRGQXV 220
           VA+  A VE++G + ALCLANSI   ERRG  V
Sbjct: 200 VAIAIAIVELIGIICALCLANSIKNAERRGYRV 232


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = +2

Query: 431 QQDSGHPXP-PXXXSRPXVTXTXHHXXXXXPXKXXPPGGPPXXPXXPNIS 577
           Q  SG P P P     P             P +  PPGGPP  P   N S
Sbjct: 15  QPSSGAPGPQPSPHQSPQAP---QRGSPPNPSQGPPPGGPPGAPPSQNPS 61



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 758 PNTSQNXPPQXXPPPPP 808
           PN SQ  PP   P  PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 745 PPTPXQHIPKXXPPXXTPPXPXP 813
           PP P Q  P   PP   PP   P
Sbjct: 39  PPNPSQGPPPGGPP-GAPPSQNP 60


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 203  CLHXRRTXCPRLSMELARHSANRAPTTS 286
            C + RRT  PRL+ + +   + R P+ S
Sbjct: 1333 CRNSRRTPVPRLAQDSSEDESYRGPSAS 1360


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 779 PPQXXPPPPP 808
           PP+  PPPPP
Sbjct: 338 PPKPAPPPPP 347


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 752  RLPNTSQNXPPQXXPPPPPXP 814
            R   +++N P    P PPP P
Sbjct: 1843 RSVGSARNIPVSGSPEPPPPP 1863


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 785  QXXPPPPPXP 814
            Q  PPPPP P
Sbjct: 1352 QQQPPPPPPP 1361



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 785  QXXPPPPPXP 814
            Q  PPPPP P
Sbjct: 1353 QQPPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,492
Number of Sequences: 438
Number of extensions: 2818
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)