Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_E03
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       29   5.2  
02_05_0040 + 25341418-25341810                                         29   5.2  
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558...    29   6.9  
04_04_1553 - 34363848-34366058,34369087-34370451                       28   9.2  
04_04_1550 - 34332948-34335986                                         28   9.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   9.2  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 176 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLXXXPFRQFACRQTVYADL 343
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 121 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 219
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
            15155932-15156024,15156282-15156351,15156716-15156912,
            15156946-15157215,15158620-15158757,15158841-15158930,
            15159041-15159247,15159987-15160154,15160300-15160503,
            15160584-15160670,15160748-15160861,15161689-15161835,
            15161914-15162063,15162211-15162276,15162376-15162480,
            15162625-15162798,15162930-15163154,15163534-15163590,
            15163858-15164019,15164234-15164302,15164391-15164471,
            15164823-15164925,15165011-15165156,15165285-15165359,
            15165441-15165508,15165586-15165667,15165745-15165858,
            15166358-15166476,15166692-15166781,15166862-15166988
          Length = 1382

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 146  QLQAGAARLPPAQWHHVLELQVAAATTSIPSRGNTXHAGPAXQRAGCV 3
            Q+Q  +     + WH  LEL+         +RG T  +GP+  R GCV
Sbjct: 1058 QIQRISGGFRASPWHERLELRRRPTAVVKAARG-TVGSGPSRSRFGCV 1104


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 163 LIGNARSFRQALLAYRQHNGTMCSSCRSRPLLR-VSLR 53
           + G  RS     LA  Q NGT+  S  S P+LR VSLR
Sbjct: 730 VFGKLRSLESLNLASNQLNGTLPLSLSSCPMLRVVSLR 767


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 163 LIGNARSFRQALLAYRQHNGTMCSSCRSRPLLR-VSLR 53
           + G  RS     LA  Q NGT+  S  S P+LR VSLR
Sbjct: 262 VFGKLRSLESLNLASNQLNGTLPLSLSSCPMLRVVSLR 299


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 20/74 (27%), Positives = 21/74 (28%)
 Frame = +1

Query: 703 PGPTXXXXXKTXXXX*KPXXRXGXXPPPXXLXGXPXXXPPXXXXPPCSPXXXXXSXPSXX 882
           P P      K       P       PPP    G P   PP    PP  P     S P   
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPP--PPPAKGPPPPPPPKGPSPPPPP 368

Query: 883 PXLXRXXTPKTPXP 924
           P   +   P  P P
Sbjct: 369 PPGGKKGGPPPPPP 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,847,404
Number of Sequences: 37544
Number of extensions: 430870
Number of successful extensions: 1332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)