Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_E03
         (926 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.6  
AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen prot...    29   6.2  
Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
 Frame = +1

Query: 754 PXXRXGXXPPPXX--LXGXPXXXPPXXXXPPCSPXXXXXSXPSXXPXLXRXXTPKTPXP 924
           P    G  PPP    + G P   PP    PP +        P   P +     P  P P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
 Frame = +1

Query: 754 PXXRXGXXPPPXX--LXGXPXXXPPXXXXPPCSPXXXXXSXPSXXPXLXRXXTPKTPXP 924
           P    G  PPP    + G P   PP    PP +        P   P +     P  P P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
 Frame = +1

Query: 754 PXXRXGXXPPPXX--LXGXPXXXPPXXXXPPCSPXXXXXSXPSXXPXLXRXXTPKTPXP 924
           P    G  PPP    + G P   PP    PP +        P   P +     P  P P
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348


>AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen protein
           49 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 659 PXGPXXPPXGXXPLGPRG 606
           P GP  PP    PLGPRG
Sbjct: 142 PAGPPGPPGPPGPLGPRG 159


>Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical
           protein C09G5.5 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = -1

Query: 710 GPGXXPXPXCLXXXXXAPXGPXXPPXGXXPLGPRGGVXLFXPGXXVXPXGP 558
           GP       C+     AP GP   P    P GP G       G    P GP
Sbjct: 122 GPAHHQQQECIKCPQGAP-GPAGAPGNPGPQGPNGNPGAPAHGGGQGPPGP 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,207,660
Number of Sequences: 27780
Number of extensions: 311026
Number of successful extensions: 908
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)