Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_E02
(829 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35641-2|CAA84707.2| 389|Caenorhabditis elegans Hypothetical pr... 52 5e-07
AF269063-1|AAG36940.1| 389|Caenorhabditis elegans core1 UDP-gal... 52 5e-07
U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical pr... 33 0.33
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF039040-4|AAB94182.1| 368|Caenorhabditis elegans Hypothetical ... 29 4.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.1
>Z35641-2|CAA84707.2| 389|Caenorhabditis elegans Hypothetical
protein C38H2.2 protein.
Length = 389
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = -2
Query: 237 PXDEGXDCCSXHSETXXXVDPLQMYVFDYLIYHLRPYGI 121
P D+G CCS ++ + V+P MYV +YLIYHL+P+GI
Sbjct: 313 PMDQGPTCCSDYAVSFHYVNPNLMYVLEYLIYHLKPFGI 351
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 377 CSGASGFXAMDSXDSMRRGRFXPFVPQDHL 288
C G A DS D+ RF PFVP+ HL
Sbjct: 266 CLEKVGVKAGDSRDADGHHRFMPFVPEHHL 295
>AF269063-1|AAG36940.1| 389|Caenorhabditis elegans core1
UDP-galactose:N-acetylgalactosamine-alpha-R beta
1,3-galactosyltransferase protein.
Length = 389
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = -2
Query: 237 PXDEGXDCCSXHSETXXXVDPLQMYVFDYLIYHLRPYGI 121
P D+G CCS ++ + V+P MYV +YLIYHL+P+GI
Sbjct: 313 PMDQGPTCCSDYAVSFHYVNPNLMYVLEYLIYHLKPFGI 351
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 377 CSGASGFXAMDSXDSMRRGRFXPFVPQDHL 288
C G A DS D+ RF PFVP+ HL
Sbjct: 266 CLEKVGVKAGDSRDADGHHRFMPFVPEHHL 295
>U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical
protein T22F7.5 protein.
Length = 462
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 310 GXNRPRLIESXESIAXNPEAPEHXSRXXPXPRRXEPRTSXTMPGRAXPPP 459
G +RP + E +I P APE P P TS PG++ PP
Sbjct: 116 GRDRPMIGEGSSNITIAPGAPETPGATVPPPTMSPSVTSGGNPGKSLCPP 165
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +3
Query: 360 PRSPRTX*PXXXXPQTP-RTPDLXHHAGQGXXTTHQXXHPPRXRXKPXPQTPXQRNHXXR 536
PR PRT P P+ P TP + + +PPR P P P + N R
Sbjct: 144 PRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRLNSHDR 203
>AF039040-4|AAB94182.1| 368|Caenorhabditis elegans Hypothetical
protein T22B11.2 protein.
Length = 368
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 377 CSGASGFXAMDSXDSMRRGRFXPFVPQDHLF 285
C + G +DS D R RF P+ P+ H +
Sbjct: 261 CLASVGIVPLDSRDEKGRQRFLPWRPEQHFY 291
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/66 (25%), Positives = 19/66 (28%)
Frame = +3
Query: 561 PPXTPXRXDPXXXRXAXXPXXSRXXXXXPPXXTXLPGXXTPHLASXGAGXXXPXPXXXAP 740
PP P + P P PP P T AG P P +P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Query: 741 XXXPPP 758
PPP
Sbjct: 298 PPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/66 (25%), Positives = 19/66 (28%)
Frame = +3
Query: 561 PPXTPXRXDPXXXRXAXXPXXSRXXXXXPPXXTXLPGXXTPHLASXGAGXXXPXPXXXAP 740
PP P + P P PP P T AG P P +P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Query: 741 XXXPPP 758
PPP
Sbjct: 319 PPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/66 (25%), Positives = 19/66 (28%)
Frame = +3
Query: 561 PPXTPXRXDPXXXRXAXXPXXSRXXXXXPPXXTXLPGXXTPHLASXGAGXXXPXPXXXAP 740
PP P + P P PP P T AG P P +P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Query: 741 XXXPPP 758
PPP
Sbjct: 304 PPPPPP 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,716,472
Number of Sequences: 27780
Number of extensions: 172953
Number of successful extensions: 411
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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