Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_E01
         (1098 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   2.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.6  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -3

Query: 913 RGXXGXFGARRRXGAXG--XGXRGRGXXGXXAG 821
           RG  G FG R   G  G   G RGRG  G  +G
Sbjct: 450 RGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSG 482


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
 Frame = +3

Query: 798  SGXPXAKXPAXXPXXPRPRXPXPXAPXRRRAPK-XPXXPRXRXXXXXXAXXXXPXXTXXX 974
            SG P A  P   P    P  P P       AP   P  P+        A    P  +   
Sbjct: 1057 SGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK-----PSVAAPPVPKPSVAV 1111

Query: 975  XSPPAPXGXPP 1007
               PAP G PP
Sbjct: 1112 PPVPAPSGAPP 1122



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 798  SGXPXAKXPAXXPXXPRPRXPXPXAPXRRRAPKXP 902
            +G P    P+  P  P+P    P  P    AP  P
Sbjct: 1186 AGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.143    0.495 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 737,187
Number of Sequences: 5004
Number of extensions: 3779
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 579724962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)