Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_E01
         (1098 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0070 - 542603-542686,542803-543441                               30   2.8  
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    29   4.9  
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    29   8.6  
01_06_0146 + 26969011-26969995,26970878-26970930                       29   8.6  

>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 16/67 (23%), Positives = 17/67 (25%)
 Frame = +3

Query: 807  PXAKXPAXXPXXPRPRXPXPXAPXRRRAPKXPXXPRXRXXXXXXAXXXXPXXTXXXXSPP 986
            P    P   P  P    P P  P     P  P  P              P       +PP
Sbjct: 33   PAQPTPTPVPTAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAPP 92

Query: 987  APXGXPP 1007
             P   PP
Sbjct: 93   PPVTPPP 99


>08_02_1143 +
           24659105-24659386,24660171-24660272,24661259-24661521,
           24661775-24661874,24662080-24662238,24662327-24663147,
           24663299-24663618,24665831-24667398
          Length = 1204

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 843 PRPRXPXPXAPXRRRAPKXPXXPRXR 920
           PRP  P P  P RRRA   P  P  R
Sbjct: 718 PRPWPPPPPPPPRRRAEPTPERPSSR 743


>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
            27125387-27125656,27126027-27126377,27126480-27126757,
            27126887-27128330
          Length = 1398

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -3

Query: 913  RGXXGXFGARRRXGAXGXGXRGRGXXGXXAGXLAXG 806
            RG    FG R R  + G G RGRG      G    G
Sbjct: 1143 RGDFSGFGGRGRGDSSGFGGRGRGDFSGGRGGRGRG 1178


>01_06_0146 + 26969011-26969995,26970878-26970930
          Length = 345

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 24/82 (29%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
 Frame = +3

Query: 765  ARXPXXXXXXXSGXPXAKXPAXXPXXPRP--RXPXPXAPXRRRAPKXPXXPRXRXXXXXX 938
            A  P       SG P    P+  P  P P    P P  P   R P+    P         
Sbjct: 53   AAAPTTPSPNHSGDPSRPIPSQAPAPPPPPTADPSPPLPHDNRTPQPRAAPPPAPAPDQP 112

Query: 939  AXXXXPXXTXXXXSPPAPXGXP 1004
            A    P       SPPAP G P
Sbjct: 113  APPSPP--PSLPPSPPAP-GSP 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.143    0.495 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,720,037
Number of Sequences: 37544
Number of extensions: 86154
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3292969272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)