Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_E01
         (1098 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protei...    32   0.83 
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    32   0.83 
AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular col...    32   0.83 
Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical pr...    31   1.9  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    30   3.4  
AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen prot...    30   3.4  

>U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protein 34
            protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 0.83
 Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
 Frame = +3

Query: 834  PXXPRPRXPXPXAPXRRRAPKXPXXPRXRXXXXXXAXXXXPXXTXXXXSPPAPXGXPPXX 1013
            P  P      P  P +  AP  P  P  R           P        PP P G P   
Sbjct: 104  PPGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPP 162

Query: 1014 XXGXXPGGXGAXSRD-APGK 1070
                 PG  G   +D APG+
Sbjct: 163  GDSGEPGSPGLPGQDAAPGE 182


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
            protein.
          Length = 298

 Score = 31.9 bits (69), Expect = 0.83
 Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
 Frame = +3

Query: 834  PXXPRPRXPXPXAPXRRRAPKXPXXPRXRXXXXXXAXXXXPXXTXXXXSPPAPXGXPPXX 1013
            P  P      P  P +  AP  P  P  R           P        PP P G P   
Sbjct: 104  PPGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCEPITPPPWKPCPQGPPGPPGPPGPP 162

Query: 1014 XXGXXPGGXGAXSRD-APGK 1070
                 PG  G   +D APG+
Sbjct: 163  GDSGEPGSPGLPGQDAAPGE 182


>AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular collagen
            RAM-4 protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 0.83
 Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
 Frame = +3

Query: 834  PXXPRPRXPXPXAPXRRRAPKXPXXPRXRXXXXXXAXXXXPXXTXXXXSPPAPXGXPPXX 1013
            P  P      P  P +  AP  P  P  R           P        PP P G P   
Sbjct: 104  PPGPAGTPGKPGRPGKPGAPGLPGNP-GRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPP 162

Query: 1014 XXGXXPGGXGAXSRD-APGK 1070
                 PG  G   +D APG+
Sbjct: 163  GDSGEPGSPGLPGQDAAPGE 182


>Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical protein
            Y41E3.2 protein.
          Length = 289

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
 Frame = +3

Query: 834  PXXPRPRXPXPXAPXRRRAPKXPXXPRXRXXXXXXAXXXXPXXTXXXXSPPAPXGXPPXX 1013
            P  P+     P  P +  AP  P  P  R           P        PP P G P   
Sbjct: 94   PQGPQGTPGKPGKPGKPGAPGQPGTP-GRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGIP 152

Query: 1014 XXGXXPGGXGAXSRD-APGK 1070
                 PG  G    D APG+
Sbjct: 153  GDNGPPGEQGPKGPDAAPGE 172


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 20/67 (29%), Positives = 24/67 (35%)
 Frame = +3

Query: 807  PXAKXPAXXPXXPRPRXPXPXAPXRRRAPKXPXXPRXRXXXXXXAXXXXPXXTXXXXSPP 986
            P    P   P  P PR P P     RR P  P  P+ R      +    P       +PP
Sbjct: 138  PPPPPPPRVPRTPPPRSPPP-----RRPPMTPPSPQRRPPRTPPS----PEPRNPPRTPP 188

Query: 987  APXGXPP 1007
            +P   PP
Sbjct: 189  SPIPPPP 195


>AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen protein
            102 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/71 (25%), Positives = 21/71 (29%)
 Frame = +3

Query: 858  PXPXAPXRRRAPKXPXXPRXRXXXXXXAXXXXPXXTXXXXSPPAPXGXPPXXXXGXXPGG 1037
            P P  P     P  P  P         A    P        PP P G P         G 
Sbjct: 143  PGPPGP---EGPAGPAGPAGNAGADGEAGAEGPAGEAGPPGPPGPDGKPGAAGSDGEAGA 199

Query: 1038 XGAXSRDAPGK 1070
             G  + +APG+
Sbjct: 200  PGTKTTNAPGE 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.143    0.495 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,337,361
Number of Sequences: 27780
Number of extensions: 56632
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2960813354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)