Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D21
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
 Frame = +1

Query: 343  PPXTXHXSAXXAQPXAAXXAXVXLXRXPP-----GALPXXPXPLXASSXXXXPPTGXPXP 507
            PP     SA  ++P +   A   L R PP        P  P P   +     P T  P P
Sbjct: 986  PPKDHPPSAPLSKPVSTSPA-APLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVP 1044

Query: 508  TXGSXXPGGXXXXGXPGXP 564
               S  P      G P  P
Sbjct: 1045 IPTSTPPVPKSSSGAPSAP 1063



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +1

Query: 424  PPGALPXXPXPLXASSXXXXPPTGXPXPTXGSXXP 528
            PP   P  P P         P T  P PT  +  P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 25/123 (20%), Positives = 30/123 (24%)
 Frame = +1

Query: 343 PPXTXHXSAXXAQPXAAXXAXVXLXRXPPGALPXXPXPLXASSXXXXPPTGXPXPTXGSX 522
           PP     S     P  +    V     PP A+P    P           +  P PT  S 
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423

Query: 523 XPGGXXXXGXPGXPXXXXXTXPPPRLXXXFXXXXFLPXXXSXRPXXXXXPXXPXXGXAPS 702
            P           P         P L         LP      P        P    AP+
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483

Query: 703 PVS 711
           P +
Sbjct: 484 PAA 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,600
Number of Sequences: 5004
Number of extensions: 16132
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)