Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_D21
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.26
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 31 0.78
11_06_0478 + 24073295-24074172,24074790-24075090 31 1.4
05_01_0142 - 940421-940701,941262-941574 31 1.4
02_03_0227 + 16601538-16601908,16603197-16603378,16603495-166035... 31 1.4
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 29 3.2
06_03_1105 - 27634787-27636025 29 3.2
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 29 3.2
12_01_0790 + 7216452-7216489,7216664-7216722,7217268-7218750,721... 29 4.2
03_05_0630 + 26260159-26260272,26260520-26260894 29 5.5
01_06_0581 - 30386018-30386440 29 5.5
03_02_0411 + 8217324-8218172 28 7.3
12_02_1174 - 26696869-26698191 28 9.6
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 9.6
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/73 (27%), Positives = 25/73 (34%)
Frame = +1
Query: 376 AQPXAAXXAXVXLXRXPPGALPXXPXPLXASSXXXXPPTGXPXPTXGSXXPGGXXXXGXP 555
++P + A V PP P P P A+ PP P P P G P
Sbjct: 298 SRPQSIAAAAVASPAPPP---PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPP 354
Query: 556 GXPXXXXXTXPPP 594
P + PPP
Sbjct: 355 PPPPPKGPSPPPP 367
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 31.5 bits (68), Expect = 0.78
Identities = 18/62 (29%), Positives = 21/62 (33%)
Frame = +1
Query: 412 LXRXPPGALPXXPXPLXASSXXXXPPTGXPXPTXGSXXPGGXXXXGXPGXPXXXXXTXPP 591
L PP LP P PL + S PP P P P P + PP
Sbjct: 1134 LDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPP 1193
Query: 592 PR 597
P+
Sbjct: 1194 PQ 1195
>11_06_0478 + 24073295-24074172,24074790-24075090
Length = 392
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 288 VLERLEMRLRSGGGGARR-PPLHATXERXRRTAXRRXXRRRPPXP 419
+L L + L GGGG RR PL A R + R RRPP P
Sbjct: 32 LLPPLLLILLVGGGGERRTKPLPAPRRRQKLAVARDRPLRRPPPP 76
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 424 PPGALPXXPXPLXASSXXXXPPTGXPXPTXGSXXPGGXXXXG 549
PPGA P P PP G P G PGG G
Sbjct: 43 PPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPG 84
>02_03_0227 +
16601538-16601908,16603197-16603378,16603495-16603577,
16604609-16604717,16606754-16606806,16606988-16607023
Length = 277
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 471 RARXQRXGXXGQRXGGVAGQXDXGGXRGGG 382
R R R G G GG AG+ + GG GGG
Sbjct: 33 RRRRGRRGDGGAGGGGAAGRGEDGGAGGGG 62
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +3
Query: 336 RRPPLHATXERXRRTAXR--RXXRRRPPXPXPPRXAAXXAP 452
R PPL + R + R R PP P PPR AA AP
Sbjct: 39 RPPPLRWSPPSPFRLSLTLSRSRRHSPPPPPPPRAAAAAAP 79
>06_03_1105 - 27634787-27636025
Length = 412
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 351 HATXERXRRTAXRRXXRRRPPXPXPPRXAAXXAP 452
H+T A R RRRP P PPR + +P
Sbjct: 277 HSTSSSSSSRAGRSPARRRPSPPPPPRCLSVDSP 310
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 288 VLERLEMRLRSG-GGGARRPPLHATXERXRRTAXRRXXRRRPPXPXPPRXAAXXAPXAGR 464
+L +L + G GGGA + R RR + PP P PP AA A A
Sbjct: 4 LLRKLHLSGGGGSGGGAAAAGAPSGEHHHRPRQHRRSSAQPPPLPPPPVVAAAAAAEAAP 63
Query: 465 ELXP 476
+ P
Sbjct: 64 VMAP 67
>12_01_0790 +
7216452-7216489,7216664-7216722,7217268-7218750,
7218828-7218892,7219023-7219080,7219152-7219262,
7219332-7219410,7219521-7219613,7219701-7219886
Length = 723
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 424 PPGALPXXPXPLXASSXXXXPPTGXP 501
PP A P P PL ASS PP P
Sbjct: 283 PPVASPLGPKPLVASSRGPEPPVASP 308
>03_05_0630 + 26260159-26260272,26260520-26260894
Length = 162
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 450 GXXGQRXGGVAGQXDXGGXRGGG 382
G G+R GG G GG RGGG
Sbjct: 118 GGYGRREGGYGGGGGYGGGRGGG 140
>01_06_0581 - 30386018-30386440
Length = 140
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 270 SGVRSQVLERLEMRLRSGGGGARR 341
SG+ +V +R+E R GGGG RR
Sbjct: 31 SGIEVKVRKRVEKEARMGGGGRRR 54
>03_02_0411 + 8217324-8218172
Length = 282
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 309 RLRSGGGGARRPPLHATXERXRRTAXRRXXRRRP 410
R GGG + RP T ER RR R R P
Sbjct: 27 RKDGGGGASHRPRFRRTRERPRRGGGDRQFRAAP 60
>12_02_1174 - 26696869-26698191
Length = 440
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/101 (22%), Positives = 27/101 (26%)
Frame = +1
Query: 424 PPGALPXXPXPLXASSXXXXPPTGXPXPTXGSXXPGGXXXXGXPGXPXXXXXTXPPPRLX 603
PP +LP P P P P P P P + PP +
Sbjct: 148 PPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQ 207
Query: 604 XXFXXXXFLPXXXSXRPXXXXXPXXPXXGXAPSPVSXXPXP 726
LP P P P G P+ V P P
Sbjct: 208 PKPQPPPTLPPPSPPPPPPTVPPRTP--GDTPAVVEPKPQP 246
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 237 HHALCSHDHSGSGVRSQVLERLEMRLRSGGGGAR 338
H A C+ D G GVR + + RLR+G G+R
Sbjct: 1373 HEAHCAQDRRGDGVRPRQIR----RLRAGEAGSR 1402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,200
Number of Sequences: 37544
Number of extensions: 249466
Number of successful extensions: 1375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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