Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D21
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    30   2.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   3.7  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    29   5.0  
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    29   5.0  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   6.6  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   6.6  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   6.6  
Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   8.7  

>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
 Frame = +1

Query: 427 PGALPXXPXPLXASSXXXXP-PTGXPXPTXGSXXPGGXXXXGXPGXPXXXXXTXP 588
           P   P  P P   +     P P G P P      PG     G PG P       P
Sbjct: 194 PAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSP 248



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +1

Query: 424 PPGALPXXPXPLXASSXXXXP-PTGXPXPTXGSXXPGGXXXXGXPG 558
           PPG  P  P     S     P P G P P      PGG    G PG
Sbjct: 256 PPG--PPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPG 299


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
 Frame = +1

Query: 424 PPGALPXXPXPLXASSXXXXPPTGXPXPTX-GSXXPGGXXXXGXPGXPXXXXXTXPPP 594
           PPG +P  P P   S        G P P   G   PGG      P  P       PPP
Sbjct: 310 PPG-MPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
 Frame = +1

Query: 424 PPGALPXXPXPLXASSXXXXPPTGXPXPTX-GSXXPGGXXXXGXPGXPXXXXXTXPPP 594
           PPG +P  P P   S        G P P   G   PGG      P  P       PPP
Sbjct: 320 PPG-MPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +1

Query: 424 PPGALPXXPXPLXASSXXXXPPTGXPXPTXGSXXPGGXXXXGXPGXP 564
           PPGA      P    S     P G P P  G    G     G PG P
Sbjct: 182 PPGAPGGPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQPGGPGNPGAP 228


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 487 PTGXPXPTXGSXXPGGXXXXGXPGXP 564
           P G P P   +  PGG    G PG P
Sbjct: 260 PAGPPGPPGNNGAPGGGYGVGPPGPP 285


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
 Frame = +1

Query: 424 PPGAL--PXXPXPLXASSXXXXPPTGXPXPTXGSXXPGGXXXXGXPGXPXXXXXT--XPP 591
           PPG +  P  P    +S      P G P        PG     G PG P         PP
Sbjct: 263 PPGPIGPPGQPGAPGSSQPGPQGPPGDPGIDGAPGNPGSPGEPGPPGQPGAGGGCDHCPP 322

Query: 592 PR 597
           PR
Sbjct: 323 PR 324


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/57 (31%), Positives = 20/57 (35%)
 Frame = +1

Query: 424 PPGALPXXPXPLXASSXXXXPPTGXPXPTXGSXXPGGXXXXGXPGXPXXXXXTXPPP 594
           PP A    P P  A+     P TG P P   +  P      G P  P       PPP
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPP-TGSPPPPPAGGSPPPPRAGSPPPPPP 302


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/57 (31%), Positives = 20/57 (35%)
 Frame = +1

Query: 424 PPGALPXXPXPLXASSXXXXPPTGXPXPTXGSXXPGGXXXXGXPGXPXXXXXTXPPP 594
           PP A    P P  A+     P TG P P   +  P      G P  P       PPP
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPP-TGSPPPPPAGGSPPPPRAGSPPPPPP 323


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/57 (31%), Positives = 20/57 (35%)
 Frame = +1

Query: 424 PPGALPXXPXPLXASSXXXXPPTGXPXPTXGSXXPGGXXXXGXPGXPXXXXXTXPPP 594
           PP A    P P  A+     P TG P P   +  P      G P  P       PPP
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPP-TGSPPPPPAGGSPPPPRAGSPPPPPP 308


>Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical
           protein F02D10.1 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = +1

Query: 433 ALPXXPXPLXASSXXXXPPTGXPXPTXGSXXPGGXXXXGXPGXPXXXXXTXPP 591
           A P  P            P G P P      PGG    G P  P       PP
Sbjct: 151 AAPCEPSTPPPCQPCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGPP 203


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = +2

Query: 587 PPPAXRFXSXXXXFCXXXPXXVPXPGXXPXXPXXXXXPLXSPXPLRXRRPR 739
           PPPA R            P  +P P   P  P     P   P P   RRPR
Sbjct: 60  PPPAPRPSGQPPG--PQGPSDLPGPSGAPPGPPHPSGPPHRPHPHPSRRPR 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,969,499
Number of Sequences: 27780
Number of extensions: 155143
Number of successful extensions: 996
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)