Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_D20
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 150 3e-37
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 149 6e-37
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 65 1e-11
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 32 0.11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 29 0.56
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 28 1.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.7
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 150 bits (363), Expect = 3e-37
Identities = 87/177 (49%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Frame = -2
Query: 658 PXVTYAPSHXWPRRAYQXTXFRXPEITKRMXWSPPTQMGEMRSPVMAKYMACCMLYPWXX 479
P VTY+P + ++ + EIT + + P QM + P +YMA C+LY
Sbjct: 272 PLVTYSPIVSAAKAFHESNSVQ--EITNQC-FEPYNQMVKC-DPRTGRYMATCLLY--RG 325
Query: 478 XXXXXXXXPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPW-CPEATWPKVQRAVCMLSNT 302
++ S S + P + PP P + KV RAVCMLSNT
Sbjct: 326 DVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNT 385
Query: 301 TAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 131
T+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 386 TSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 442
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 149 bits (360), Expect = 6e-37
Identities = 87/178 (48%), Positives = 107/178 (60%), Gaps = 2/178 (1%)
Frame = -2
Query: 658 PXVTYAPSHXWPRRAYQXTXFRXPEITKRMXWSPPTQMGEMRSPVMAKYMACCMLYPWXX 479
P VTYAP + ++ + EIT + + P QM + P +YMA C+LY
Sbjct: 268 PLVTYAPIVSAAKAFHESNSVQ--EITNQC-FEPYNQMVKC-DPRAGRYMATCLLYRGDV 323
Query: 478 XXXXXXXXPS-LPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATW-PKVQRAVCMLSN 305
+ + +K ++ P + PP E + KV RAVCMLSN
Sbjct: 324 IPRDVQAAVTTIKAKRTI---QFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSN 380
Query: 304 TTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 131
TT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 381 TTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 438
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 64.9 bits (151), Expect = 1e-11
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Frame = -2
Query: 340 PK-VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---ED 173
PK ++ + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA D
Sbjct: 358 PKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMND 417
Query: 172 LAALEKDYEEVGMD 131
L + + Y+E G+D
Sbjct: 418 LVSEYQQYQEAGID 431
Score = 29.9 bits (64), Expect = 0.43
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -1
Query: 575 THXLEPANPDGXNAIPRHGQVHGLLYAVPVVTSYPKDVNAAIATIKTKRTIQFVDWCPTG 396
T + AN A PRHG+ + S K+V+ I +++TK + FV+W P
Sbjct: 290 TQQMFDANNMMVAADPRHGRYLTVAALFRGKVSM-KEVDEQIRSVQTKNSAYFVEWIPDN 348
Query: 395 FKVGINYQPP 366
+ PP
Sbjct: 349 VLKAVCSVPP 358
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.11
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -3
Query: 324 PSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--KRI 151
P+ + P + G+ TS TS T S S++ S+P P W P+
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSA 193
Query: 150 TKKSAWTPLKARVREPKSTK 91
S+ TP+ V EP+ TK
Sbjct: 194 LGTSSKTPVYVVVDEPRFTK 213
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 29.5 bits (63), Expect = 0.56
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -1
Query: 473 PKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 360
P DV+ ++ I+ +R F+ W P +V ++ + P +
Sbjct: 330 PADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYI 367
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -3
Query: 324 PSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP--KPVRTWLPSKRI 151
P+ CP+ PP L A+ SS S ++ + T + + P + WLP +
Sbjct: 220 PATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMTQP 279
Query: 150 TKKSAWTPLKARVREPKS 97
T + P A V +P S
Sbjct: 280 T----FQPPSANVYQPAS 293
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 408 VSNRFQGRYQLPATHRGARRRLGPRFNVPSACCPTPPPSLKLGL-ALTTSSTSCTPSVLS 232
VS + + LP T + A R+N + P P P G+ A+ T++TS TP LS
Sbjct: 1589 VSTMYGVKPTLPETPKPAIATHS-RYNASFSSSPPPQPGNSSGMSAMNTNTTSTTPVSLS 1647
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 408 VSNRFQGRYQLPATHRGARRRLGPRFNVPSACCPTPPPSLKLGL-ALTTSSTSCTPSVLS 232
VS + + LP T + A R+N + P P P G+ A+ T++TS TP LS
Sbjct: 1589 VSTMYGVKPTLPETPKPAIATHS-RYNASFSSSPPPQPGNSSGMSAMNTNTTSTTPVSLS 1647
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 451 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 365
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,950
Number of Sequences: 5004
Number of extensions: 60048
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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