Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D20
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.15 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   4.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.2  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   4.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.5  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   7.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -3

Query: 390  GRYQLPATHRGAR-----RRLGPRFNVPSACCPTPPP 295
            G+Y  P  H G+R     R +G   N+P +  P PPP
Sbjct: 1825 GQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEPPP 1861


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 103 RLPHPRLQRSP 135
           R PHPRL+R P
Sbjct: 110 RPPHPRLRREP 120



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 103 RLPHPRLQRSP 135
           R PHPRL+R P
Sbjct: 136 RPPHPRLRREP 146


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
 Frame = -3

Query: 402 NRFQGRYQLPA---THRGARRRLGPRFNVPSA---CCPTPPPSLKL 283
           NRF G Y++PA        R  LG    V +    C   P PSL L
Sbjct: 435 NRFSGEYEIPAHGLPPSATRYDLGAVATVGTTVAPCFEEPLPSLPL 480


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 537 CDPPSWPSTWLAV 499
           CD  SW S WL++
Sbjct: 64  CDVLSWQSKWLSI 76


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 313 LSNTTAIAEAWARLDHKFD 257
           L+NT  +   W  LD+ FD
Sbjct: 32  LTNTLNVIHKWKYLDYDFD 50


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 441 QNQAYYPIRRLVSNRFQGRYQ 379
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 88  WLSTLRLPHPRLQRSPCRLLRNPFRGQPGPHGLRRTLPPPYPHRRTSARKHA 243
           ++S  R PHPRL+R        P   +P      R   PP+P  R  A   A
Sbjct: 160 YISQPRPPHPRLRRE-AEPEAEPGNNRPVYIPQPR---PPHPRLRREAEPEA 207



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 88  WLSTLRLPHPRLQR 129
           ++S  R PHPRL+R
Sbjct: 104 YISQPRPPHPRLRR 117


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 488 RVQHTASHVLGHDGGSHFXHL 550
           R QH A  + GH    H  H+
Sbjct: 795 RHQHAAQMIYGHQQSHHGLHI 815


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 199 PPPYPHRRTSARKHAWRT 252
           P P+P R T A+ H + T
Sbjct: 417 PKPFPRRATLAQLHNFTT 434


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 80  IFYGALAPFYIPVI 39
           + Y AL  FYIP++
Sbjct: 248 VVYSALGSFYIPML 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,510
Number of Sequences: 438
Number of extensions: 5268
Number of successful extensions: 28
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)