Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D18
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.35 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 391  PTXTPPXPGXPPQKXPGALPXSTPPGXXXP 480
            P   PP P  PP   P  LP S+ P    P
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 394 TXTPPXPGXP--PQKXPGALPXSTPP 465
           T TPP P  P  P   P +LP S PP
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPP 437


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/49 (28%), Positives = 16/49 (32%)
 Frame = +1

Query: 367  IPXGXYFXPTXTPPXPGXPPQKXPGALPXSTPPGXXXPIXPKXXXXLXP 513
            +P      P    P  G PP   P A     PP    P  PK    + P
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -2

Query: 467 PGGVXXGRAPGXFWGGXPGXGGVXVGXK*XPXG 369
           PGG   G  PG F GG  G GG   G    P G
Sbjct: 237 PGGFGGG--PGGFGGGLGGFGGGPGGFGGGPGG 267


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +1

Query: 391 PTXTPPXPGXPPQKXPGA--LPXSTPP 465
           PT  PP P  PP     A  +P   PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPP 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,511
Number of Sequences: 5004
Number of extensions: 13820
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)