Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_D18
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0070 - 542603-542686,542803-543441 34 0.12
02_01_0302 - 2021221-2023305 31 0.86
08_02_1334 - 26224546-26225337 31 1.1
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 31 1.1
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 31 1.5
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 2.0
11_06_0610 - 25449085-25453284 29 6.0
06_01_0486 - 3455030-3455770 29 6.0
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 28 8.0
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +1
Query: 391 PTXTPPXPGXPPQKXPGALPXSTPPGXXXP 480
P TPP PP P ALP STPP P
Sbjct: 103 PPVTPPPVSPPPATPPPALPPSTPPPVAAP 132
>02_01_0302 - 2021221-2023305
Length = 694
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 370 PXGXYFXPTXTPPXPGXPPQKXPGALPXSTPPGXXXP 480
P G Y TPP G PP G P S PG P
Sbjct: 568 PPGSYGPIPSTPPSSGSPPSPSSGYQPPSGQPGASPP 604
>08_02_1334 - 26224546-26225337
Length = 263
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 394 TXTPPXPGXPPQKXPGALPXSTPP 465
T TPP P PP+ P LP +PP
Sbjct: 120 TATPPPPPPPPETPPRQLPSVSPP 143
>05_01_0460 -
3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 403 PPXPGXPPQKXPGALPXSTPPGXXXPIXP 489
PP G PP P A + PPG P+ P
Sbjct: 7 PPGTGAPPPPLPAAAAAAGPPGGGKPLTP 35
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +1
Query: 382 YFXPTXTPPXPGXPPQKXP-GALPXSTPPGXXXPIXP 489
Y P PP P PP P ALP S+PP P P
Sbjct: 63 YPMPGSLPPPPPRPPSFAPENALPPSSPPPPSPPPPP 99
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +1
Query: 391 PTXTPPXP-GXPPQKXPGALPXSTPPGXXXPI 483
P PP P G PPQ P LP PP P+
Sbjct: 1182 PPPPPPLPSGPPPQPAPPPLPIQPPPIPPPPV 1213
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Frame = +1
Query: 391 PTXTPPXPGXPPQKXPG-ALPXSTPPGXXXPIXPKXXXXLXPEXQNFXGGXXPAGXXXRS 567
P P P P + P A P S PP P P P + P+G
Sbjct: 776 PEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESS-PPTPEKSPS--PPSGHEGTP 832
Query: 568 XSPXRRXTPXXXSLXDXPXAXXXAXPXPQKXXXSXP 675
SP + +P + P + P P+ S P
Sbjct: 833 PSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVSSPP 868
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 391 PTXTPPXPGXPPQKXPGALPXSTPPGXXXPIXP 489
P PP P PP P P S PP P P
Sbjct: 122 PYVPPPTPPSPPPYVPPPTPPSPPPYVPPPSPP 154
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 391 PTXTPPXPGXPPQKXPGALPXSTPPGXXXPIXPKXXXXLXP 513
P TPP PP P +P TPP I P + P
Sbjct: 86 PPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPP 126
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +1
Query: 370 PXGXYFXPTXTPPXPGXPPQ--KXPGALPXSTPPGXXXP 480
P G + P PP P PPQ PG+ + P G P
Sbjct: 421 PCGPPYAPPPPPPPPPPPPQALPLPGSYNFAEPVGFYWP 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,663,311
Number of Sequences: 37544
Number of extensions: 146749
Number of successful extensions: 1058
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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